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Protein Ontology
Ontologies PRO/PROEVO http://www.bioontology.org/wiki/index.php/PRO protein evolutionary families,
multiple endproducts of genes in development
protein structure, function implementation
RnaO http://roc.bgsu.edu/ RNA sequence, structure, motifs, alignments in development
GO implementation
SO implementation
PATO http://www.bioontology.org/wiki/index.php/PATO phenotypic and trait ontology implementation
MAO http://bips.u-strasbg.fr/LBGI/MAO/mao.html multiple alignments of DNA,
RNA and protein sequences and structures implementation
NCBI Taxonomy http://www.ncbi.nlm.nih.gov/Taxonomy/ Organismal classification, genetic code used widely
Data formats, database schemas
NCBI data model http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML sequences, alignments, annotations used at NCBI
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