PipeWorkReferenceManual

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* You need to fill in all textual fields. You can select several RealExp ... or do it later.
* You need to fill in all textual fields. You can select several RealExp ... or do it later.
===GXManageSamples===
===GXManageSamples===
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* GXManageSample allows to show, update, clone or create a new Experiment in GxDb
+
A sample is defined by a Tissue, an Individual (defined by an Organism and a Genotype), a Treatment (with Treatmenttype).
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Genotype Organism
+
 
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Samplecondition
+
All these entities can be shown, updated and created with this PipeWork
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Individual
+
* GXManageSample allows to show, update or create a new Sample in GxDb
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Treatmenttype
+
* GXManageSample allows to show, update or create a new Tissue in GxDb
-
Treatment
+
* GXManageSample allows to show, update or create a new Individual in GxDb
-
Tissue
+
* GXManageSample allows to show, update or create a new Organism in GxDb
-
Sample
+
* GXManageSample allows to show, update or create a new Genotype in GxDb
 +
* GXManageSample allows to show, update or create a new Treatment in GxDb
 +
* GXManageSample allows to show, update or create a new Treatmenttype in GxD
 +
 
 +
# Select, update or create any missing entities, fill in the textual fields and evaluate the whome PipeWork
 +
# Each sub entity can be run separately by clicking on the corresponding PWI button.

Revision as of 16:38, 26 February 2009

Contents

General behaviour

the SelectFrom_listOfSomething or SelectMultipleFrom_listOfSomething asks the user to select one or more lines from ... Something.

In most of all cases the first line is '0 all concerned Something'. This means that in the processes it will concern no or all Something depeding on the context.

For example if we select '0 all concerned RealExp' in GXManageExperiment it means that the RealExp are simply not tested to determine which Experiment is to address.

GX PipeWork Reference Manual

The GXManageXXX mainly allow to update or create new records in GxDb (you can also use the Show)

For a New, fill in all fields concerning name, description, ... and select the entities to which the foreign keys will point. (some fields are optional but there is no easy way to determine which one). ANd choos '0 all concerned XXX' For a Update leave blank the key you wan't update.

A good way to proceed is to

  1. preselect the Enter, Select which will be mainly constant for what you are doing,
  2. save the GXManageXXX as GXManageXXXTempo
  3. do your New, Update, Clone
  4. delete GXManageXXXTempo

GXManageExperiment

  • GXManageExperiment allows to show, update, clone or create a new Experiment in GxDb
  • You need to fill in all textual fields. You can select several RealExp ... or do it later.

GXManageSamples

A sample is defined by a Tissue, an Individual (defined by an Organism and a Genotype), a Treatment (with Treatmenttype).

All these entities can be shown, updated and created with this PipeWork

  • GXManageSample allows to show, update or create a new Sample in GxDb
  • GXManageSample allows to show, update or create a new Tissue in GxDb
  • GXManageSample allows to show, update or create a new Individual in GxDb
  • GXManageSample allows to show, update or create a new Organism in GxDb
  • GXManageSample allows to show, update or create a new Genotype in GxDb
  • GXManageSample allows to show, update or create a new Treatment in GxDb
  • GXManageSample allows to show, update or create a new Treatmenttype in GxD
  1. Select, update or create any missing entities, fill in the textual fields and evaluate the whome PipeWork
  2. Each sub entity can be run separately by clicking on the corresponding PWI button.
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