1mfa_ref4 - reference 4


Name                 immunoglobulin fab fragment

Number of sequences              8
Alignment Length                 495
Longest Sequence                 468
Shortest Sequence                117
Average Percent Identity         17
Maximum Percent Identity         42
Minimum Percent Identity         8

Sequence Name    SWISSPROT Accession
1mfa                 P01726         
1igtB                P01726         
1mlcA                P01765         
1bec                 P04213         
1tcrA                P01738         
1kb5B                P04214         
CD4_HUMAN            P01730         
IL6A_HUMAN           P08887         

Family   1mfa 1igtB 1fgvH 1bec 1tcrA 1kb5B CD4_HUMAN IL6A_HUMAN


1mfa         1  .........wifgggtkltvlgqgevqvqqsg.tvvarpgasVKMSCkas
1igtB        1  ........................evklqesg.gglvqpggsLKLSCats
1mlcA        1  ........................dieltqspatlsvtpgdsVSLSCras
1bec         1  ..........................avtqsprnkvavtggkVTLSCqqt
1tcrA        1  .........................qsvtqpdarvtvsegasLQLRCkys
1kb5B        1  ........................vtlleqnprwrlvprgqaVNLRCilk
CD4_HUMAN    1  ......mnrgvpfrhlllvlqlallpaatqgkkvvlgkkgdtVELTCtas
IL6A_HUMAN   1  mlavgcallaallaapgaalaprrcpaqevargvltslpgdsVTLTCpgv

1mfa        41  gytftnywmhwikqrpgqglewigaiypgnsatfynhkfraktkltavts
1igtB       26  gftfsdyymywvrqtpekrlewvayisngggstyypdtvkgrftisrdna
1mlcA       27  .qsis.nnlhwyqqkshesprllikyv....sqsssg.ipsrfsgsg...
1bec        25  nn...hnnmywyrqdtghglrlihysyg.agstekgd.ipdgykasrp..
1tcrA       26  ysa..tpylfwyvqyprqglqlllkyys..gdpvvq..gvngfeaefsk.
1kb5B       27  nsq..ypwmswyqqdlqkqlqwlftlrs.pgdkevkslpgadylatrv..
CD4_HUMAN   45  qkk..siqfhwkn...snqikilgnqgs.fltkgpsk.lndradsrrslw
IL6A_HUMAN  51  eped.natvhwvlrkp...............aags...hpsrwagm....

1mfa        91  tttaymelsslt.seDSAVYYCtrgg.....hgyygdywgqgasltvs..
1igtB       76  kntlylqmsrlk.seDTAMYYCarhg.....gyyamdywgqgttvtvssa
1mlcA       67  sgtdftlsinsveteDFGMYFCqqs.......nswprtfgggtkleikra
1bec        68  sqeqfslilelatpsQTSVYFCasgg...grgsyaeqffgpgtrltvled
1tcrA       69  snssfhlrkasvhwsDSAVYFCavsg......fasaltfgsgtkvivlpy
1kb5B       72  tdtelrlqvanm..sQGRTLYCtcsaapdwgasaetlyfgsgtrltvl..
CD4_HUMAN   88  dqgnfpliiknlkieDSDTYICeved...qkeevqllvfg.ltansdthl
IL6A_HUMAN  78  .grrlllrsvql..hDSGNYSCyrag............rpagtvhllvdv

1mfa       133  ..................................................
1igtB      120  ktt..apsvyplapvcgdttg..ssvtlgclvkgyfpepvtltwnsgsls
1mlcA      110  da...aptvsifppsseqlts..ggasvvcflnnfypkdinvkwki....
1bec       115  lrqvtppkvslfepskaeiank.qkatlvclargffpdhvelswwv....
1tcrA      113  iqnpepavyalkdprsqd........stlclftdfdsqinvpktme....
1kb5B      118  ..................................................
CD4_HUMAN  134  lqg.qsltltles.......ppgsspsvqcrspr................
IL6A_HUMAN 113  ppeepqlscfrksplsnvvcewgprstpslttkavllvrkfqnspaedfq

1mfa       133  ..................................................
1igtB      166  sgvhtfpa.vlqsd..........lytlsssvtvtsstwpsq...sitcn
1mlcA      151  dgserqng.vlnswtdqds..kdstysmsstltltkdeyerh..nsytce
1bec       160  ngkevhsg.vstdpqayke..snysyclssrlrvsatfwhnp.rnhfrcq
1tcrA      151  sgtfitdatvldmk.......amdsksngaiawsnq........tsftcq
1kb5B      118  ..................................................
CD4_HUMAN  160  .gkniqggktlsvs...........qlelqdsgt............wtct
IL6A_HUMAN 163  epcqysqesqkfscqlavpegdssfyivsmcvassvgskfsktqtfqgcg

1mfa       133  ..................................................
1igtB      202  vahpas...stkvdkkieprgptikpcppckcpapnllggpsvfifppki
1mlcA      196  athktstspivksfnrnec...............................
1bec       206  vqfhglseedkwpegspkpvtqnisaeawgrad.................
1tcrA      186  difketnatypssdvpc.................................
1kb5B      118  ..................................................
CD4_HUMAN  186  vlqn.....qkkvefkidivvlafqkassivykkegeqvefsfplaftve
IL6A_HUMAN 213  ilqpdppanitvtavarnprwlsvtwqdphswnssfyrlrfelryraers

1mfa       133  ..................................................
1igtB      249  kdvlmislspivtcvvvdvseddpdvqiswfvnnvevhtaqtqthredyn
1mlcA      215  ..................................................
1bec       239  ..................................................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  231  kltgsgelwwqaerassskswitfdlknkevsvkrvtqdpklqmgkklpl
IL6A_HUMAN 263  ktfttwmvkdlqhhcvihdawsglrhvvqlraqeefgqgewsewspeamg

1mfa       133  ..................................................
1igtB      299  stlrvvsalpiqhqdwmsgkefkckvnnkdlpapiertiskpkgsvrapq
1mlcA      215  ..................................................
1bec       239  ..................................................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  281  hltlpqalpqyagsgnltlaleaktgklhqevnlvvmratqlqknltcev
IL6A_HUMAN 313  tpwtesrsppaenevstpmqalttnkdddnilfrdsanatslpvqdsssv

1mfa       133  ..................................................
1igtB      349  vyvlpppeeemtkkqvtltcmvtdfmpediyvewtnngktelnykntepv
1mlcA      215  ..................................................
1bec       239  ..................................................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  331  wgptspklmlslklenkeakvskrekavwvlnpeagmwqcllsdsgqvll
IL6A_HUMAN 363  plptflvaggslafgtllciaivlrfkktwklralkegktsmhppyslgq

1mfa       133  ..................................................
1igtB      399  ldsdgsyfmysklrvekknwvernsyscsvvheglhnhhttksfsr....
1mlcA      215  ..................................................
1bec       239  ..................................................
1tcrA      203  ..................................................
1kb5B      118  ..................................................
CD4_HUMAN  381  esnikvlptwstpvqpmalivlggvaglllfiglgiffcvrcrhrrrqae
IL6A_HUMAN 413  lvperprptpvlvplisppvspsslgsdntsshnrpdardprspydisnt

1mfa       133  ............................
1igtB      445  ............................
1mlcA      215  ............................
1bec       239  ............................
1tcrA      203  ............................
1kb5B      118  ............................
CD4_HUMAN  431  rmsqikrllsekktcqcphrfqktcspi
IL6A_HUMAN 463  dyffpr......................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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