1havA_ref1 - reference 1
Name hepatitis proteinase
Number of sequences 5
Alignment Length 237
Longest Sequence 199
Shortest Sequence 136
Average Percent Identity 15
Maximum Percent Identity 21
Minimum Percent Identity 10
Sequence Name SWISSPROT Accession
1havA P06441
1agjA P09331
5ptp P00760
2sga P00776
1svpA P27285
Family 1havA 1agjA 5ptp 2sga 1svpA
1havA 1 .knlvqfgvgeknGSVRWVmnalgvk.ddwLLVPSHAykfekdyemmefy
1agjA 1 .ntignvfvk...GQTSATgvlig...kntVLTNRHIakfa.ngdpskvs
5ptp 1 .pyqvslns....GYHFCGgslin...sqwVVSAAHCy.......ksgiq
2sga 1 iaggeaitt...gGSRCSLgfnvsvngvahALTAGHCtnis.......as
1svpA 1 .drlfdvkne..dGDVIGHalame....gkVMKPLHVk..........gt
1havA 49 fnrg............gtyysisagnvviqsldvgf...qDVVLMKVpti
1agjA 43 frpsintddngntetpygeye...vkeilqepfgag...vDLALIRLkpd
5ptp 36 vrlge...dninv.vegneqfisasksivhpsynsntlnnDIMLIKLksa
2sga 41 wsi....................gtrtgtsfp......nnDYGIIRHsnp
1svpA 34 idhp................vlsklkftkssa.......yDMEFAQLpvn
1havA 84 p.......kfrditqhfikkgdvpral.nrlatlvttvng........tp
1agjA 87 qngvslgdkisp.....akigtsndlkdgdkleligypfdhkv.....nq
5ptp 82 aslns...rvas.....islptsc.asagtqclisgwgntkssgtsypdv
2sga 65 aaad...grvylyngsyqdittagnafvgqavqrsgst..........tg
1svpA 61 m.......rsea.....ftytseh....pegfynwh..............
1havA 118 mlisegplkmeekatyvhkkndgt.tvdltvdqawrgkgeglpGMCGGAL
1agjA 127 mhrseielttlsr..............glryygf......tvpGNSGSGI
5ptp 123 lkclkapilsdsscksayp...gqitsnmfcagyleggkdscqGDSGGPV
2sga 102 lrsgsvtgl...natvnyg..ssgivygmiqtnv.....caqpGDSGGSL
1svpA 81 hgavqysgg.................rftiprg......vggrGDAGRPI
1havA 167 VSSnqsiqnAILGIHVAGg......nsilvaklvt..
1agjA 157 FNS....ngELVGIHSSKvshldrehqinygvgigny
5ptp 170 VCS.....gKLQGIVSWGsgcaqk.nkpgvytkvcn.
2sga 142 FAG.....sTALGLTSGGsgncrt.ggttfyqpvte.
1svpA 108 MDN....sgRVVAIVLGGadeg...trtalsvvtwn.
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
Back to Index