1pamA_ref1 - reference 1


Name                 cyclodextrin 														

Number of sequences              5
Alignment Length                 688
Longest Sequence                 572
Shortest Sequence                425
Average Percent Identity         18
Maximum Percent Identity         22
Minimum Percent Identity         16

Sequence Name    SWISSPROT Accession
1pamA                P05618         
1smd                 P04745         
1jdc                 P13507         
1bf2                 P10342         
1vjs                 P06278         

Family   1pamA 1smd 1jdc 1bf2 1vjs


1pamA        1  .tDVIYQIFtdrfsdgnpannptgaafdgsctnlrlycggdWQGIInkin
1smd         1  grTSIVHLFew.............................rWVDIAlece
1jdc         1  gdEIILQGFhwnvvrea....................pndwYNILRqqa.
1bf2         1  ..DVIYEVHvrgfteqdts..............ipaqyrgtYYGAGlka.
1vjs         1  lnGTLMQYFewympn......................dgqhWKRLQnds.

1pamA       50  dgyLTGMGITAIwisqpveniysviny..sgvnntayhgywardfkkt..
1smd        22  r.yLAPKGFGGVqvsppnenvaih.....npfrp.wweryqpvsyklc..
1jdc        30  .atIAADGFSAIwmpvpwrdfsswsd...gsksg.ggegyfwhdfnk...
1bf2        34  .syLASLGVTAVeflpvqetqndandvvpnsdanqnywgymtenyfspdr
1vjs        28  .ayLAEHGITAVwippaykg.........tsqad...vgygaydlydlge

1pamA       96  .......npayGTMQDFKNLIDTAHAHNIKVIIDFAPNHtsp........
1smd        63  ........trsGNEDEFRNMVTRCNNVGVRIYVDAVINHmcg........
1jdc        72  .......ngryGSDAQLRQAASALGGAGVKVLYDVVPNHmnr........
1bf2        83  ryay..nkaagGPTAEFQAMVQAFHNAGIKVYMDVVYNHtae........
1vjs        65  fhqkgtvrtkyGTKGELQSAIKSLHSRDINVYGDVVINHkggadatedvt

1pamA      131  ...assddpsfaengrlydngnllggytn.........dtqnlfhhy...
1smd        97  ...navsagtsstcgsyfnpgsrdfpavp.........ysgwdfndgkck
1jdc       107  ...gypdkeinlp.........................agqgfwrndcad
1bf2       123  ...ggtwtssdpttatiyswrgl...............dnatyyelts..
1vjs       115  avevdpadrnrvisgehlikawthfhfpgrgstysdfkwhwyhfdgtdwd

1pamA      166  ....ggtdfstiengiyknlydlaDLNHNNSSVDVYLKDaikmwl.dLGV
1smd       135  tgsgdienyndatqvrdcrlsgllDLALGKDYVRSKIAEymnhli.dIGV
1jdc       129  .....pgnypndcddgdrfiggdaDLNTGHPQVYGMFRDeftnlrsqYGA
1bf2       153  .....gnqyfy.....dntgig.aNFNTYNTVAQNLIVDslaywantMGV
1vjs       165  esrklnriykf..qgkaydylmyaDIDYDHPDVAAEIKRwgtwyaneLQL

1pamA      211  DGIRVDAVkhmp...........................fgwQKSFMati
1smd       184  AGFRIDASkhmw...........................pgdIKAILdkl
1jdc       174  GGFRFDFVrgya...........................perVNSWMtds
1bf2       192  DGFRFDLAsvlgnsclngaytasapncpnggynfdaadsnvaINRILref
1vjs       213  DGFRLDAVkhik...........................fsfLRDWVnhv

1pamA      234  nnyk........pvFTFGEWflgv...........neispeyhqfanes.
1smd       207  hnlnsnwfpegskpFIYQEVidlg............gepikssdyfg...
1jdc       197  ..........adnsFCVGQLwkgpseypnwdwrntaswqqiikdwsdra.
1bf2       242  tvrpaag...gsglDLFAEPwaig............gnsyqlggfpq...
1vjs       236  rekt......gkemFTVAEYwqn..............dlgalenylnktn

1pamA      264  .gmslldfrfaqkarqvfrdnt...dnMYGLKAmlegsevdya....qvn
1smd       242  .ngrvtefkygaklgtvirkwn..gekMSYLKNwgegwgfm......psd
1jdc       236  .kcpvfdfalkermqn.........gsIADWKHglngnpd.....prwre
1bf2       274  .gwsewnglfrdslrqaqnelgsmtiyVTQDANdfsgssnlfqssgrspw
1vjs       266  fnhsvfdvplhyqfhaastqgg..gydMRKLLNstvvsk........hpl

1pamA      306  dqvTFIDNHDM..........erfht........................
1smd       283  ralVFVDNHDNqrghg..aggasilt........................
1jdc       271  vavTFVDNHDTgyspgqnggqhhwalq.......................
1bf2       323  nsiNFIDVHDGm......tlkdvyscngannsqawpygpsdggtstnysw
1vjs       306  kavTFVDNHDTqp.....gqslestvqtw.....................

1pamA      322  ..........sngdrrkleqALAFTLTS.rGVPAIYYGseqymsgg....
1smd       307  ...........fwdarlykmAVGFMLAHpyGFTRVMSSyrwpryfengkd
1jdc       298  ..............dglirqAYAYILTS.pGTPVVYWDhmydwg......
1bf2       367  dqgmsagtgaavdqrraartGMAFEMLS.aGTPLMQGGdeylr.......
1vjs       330  ................fkplAYAFILTResGYPQVFYGdmygtkgdsqre

1pamA      357  ....ndpdnrar............lpsfsttttayqvIQKLAPLRKsn..
1smd       346  vndwvgppndngvtkevtinpdttcgndwvcehrwrqIRNMVNFRNvvdg
1jdc       327  .................................ygdfIRQLIQVRRaagv
1bf2       409  ..tlqcnnnayn..ldssan.wltyswttdqsnfytfAQRLIAFRKahpa
1vjs       364  ip..............................alkhkIEPILKARKqy..

1pamA      389  ...paiaygstherwin..............ndviiyerkf....gnnVA
1smd       396  ........qpftnwydng.............snqvafgrg.......nRG
1jdc       344  r......adsaisfhsgy.............sglvatvsg.....sqqTL
1bf2       454  lrpsswysgsqltwyqpsgavadsnywnntsnyaiayaingpslgdsnSI
1vjs       382  ......aygaqhdyfdh..............hdivgwtregdssvansgl

1pamA      418  VVAINrnmntpasitglvtsLPRG.SYNDVLg.gilngn.......tLTV
1smd       418  FIVFNnd.dwtfslt.lqtgLPAG.TYCDVIsgdkingnctgi...kIYV
1jdc       370  VVALN......sdlg.npgqVASG.SFSEAV..nasngqv......rVWR
1bf2       504  YVAYNgw.sssvtft.lpap.PSGTQWYRVTdtcdwndgastfvapgSET
1vjs       412  aalitdg.pggakrm.yvgrQNAGETWHDITg.nrse.........pVVI

1pamA      459  GAGGaasnftlap...ggtavwqyttdattpiign...
1smd       462  SDDGka.hfsisnsaedpfiaihaeskl..........
1jdc       404  SGTGsg...ggep...galvsvsfrcdngatqmgdsvy
1bf2       551  LIGGagttygqcg...qsllllisk.............
1vjs       450  NSEGwg.efhvng...gsvsiyvq..............

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

Back to Index