1cpt_ref1 - reference 1


Name                 cytochrome p450								

Number of sequences              4
Alignment Length                 466
Longest Sequence                 434
Shortest Sequence                378
Average Percent Identity         21
Maximum Percent Identity         26
Minimum Percent Identity         15

Sequence Name    SWISSPROT Accession
1cpt                 P33006         
1oxa                 Q00441         
1phd                 P00183         
2hpdA                P14779         

Family   1cpt 1oxa 1phd
Family   2hpdA


1cpt         1  eviypAFKWLRDEQ..pLAMAHIEGydpmwiatkhadvmqigkqpglfsn
1oxa         1  .dwysTYAELRETA..pVTPVRFLG.qdawlvtgydeakaalsdlr.lss
1phd         1  .gvqeAWAVLQESNvpdLVWTRCNG..ghwiatrgqlireayedyrhfss
2hpdA        1  .kpvqALMKIADEL.geIFKFEAPGrvtrylss.qrlikeacdesr.fdk

1cpt        49  ae.....gseilyd..qnneafmrsisggcphvidsltsm.DPPTHTAYR
1oxa        46  dpkkkypgvevefpaylgfpedvrnyfa.....tnmgts..DPPTHTRLR
1phd        48  ecp..............fipreageay......dfiptsm.DPPEQRQFR
2hpdA       47  n..............lsqalkfvrdfag.....dglftswtHEKNWKKAH

1cpt        91  GLTLNWFQPASIRKLEENIRRIAQASVQRLldf..dgecdfmtdcalyyp
1oxa        89  KLVSQEFTVRRVEAMRPRVEQITAELLDEVgds...gvvdivdrfahplp
1phd        77  ALANQVVGMPVVDKLENRIQELACSLIESLrpq...gqcnftedyaepfp
2hpdA       78  NILLPSFSQQAMKGYHAMMVDIAVQLVQKWerlnadehievpedmtr..l

1cpt       139  lhvVMTALGVp...........eddeplmlkltqdffgvhepdeqavaap
1oxa       136  ikvICELLGVd...........eaargafgrwsseilvmd..........
1phd       124  iriFMLLAGLp...........eediphlkyltdqmtr............
2hpdA      126  tldTIGLCGFnyrfnsfyrdqphpfitsmvraldeamnklq....ranpd

1cpt       178  rqsadeaarrfhETIATFYDYFNgftvdrrscp..kdDVMSLLANSKld.
1oxa       165  ....peraeqrgQAAREVVNFILdlverrrtep..gdDLLSALISVQddd
1phd       151  ....pdgsmtfaEAKEALYDYLIpiieqrrqkp..gtDAISIVANGQvn.
2hpdA      172  dpaydenkrqfqEDIKVMNDLVDkiiadrkasgeqsdDLLTHMLNGKdpe

1cpt       225  .gnyIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEqlalaksd.
1oxa       209  dgr.LSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDqlalvrad.
1phd       194  .grpITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEhrqelier.
2hpdA      222  tgepLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHvlqkaaeea

1cpt       273  ................palIPRLVDEAVRWTAPVKSFMRTALADTEVRG.
1oxa       257  ................psaLPNAVEEILRYIAPPETTTRFAAEEVEIGG.
1phd       242  ................perIPAACEELLRRFSLV.ADGRILTSDYEFHG.
2hpdA      272  arvlvdpvpsykqvkqlkyVGMVLNEALRLWPTAPAFSLYAKEDTVLGGe

1cpt       306  qnIKRGDRIMLSYPSANRDeevf.snpdefditrfp.......nrhlgFG
1oxa       290  vaIPQYSTVLVANGAANRDpsqf.pdphrfdvtrdt.......rghlsFG
1phd       274  vqLKKGDQILLPQMLSGLDeren.acpmhvdfsrqk.......vshttFG
2hpdA      322  ypLEKGDELMVLIPQLHRDktiwgddveefrperfenpsaipqhafkpFG

1cpt       348  WGAHMCLGQHLAKLEMKIFFEELLPKLksvels.gpprlvat..nfvggp
1oxa       332  QGIHFCMGRPLAKLEGEVALRALFGRFpalslgidaddvvwrrslllrgi
1phd       316  HGSHLCLGQHLARREIIVTLKEWLTRIpdfsia.pgaqiqhksg.ivsgv
2hpdA      372  NGQRACIGQQFALHEATLVLGMMLKHF.dfedh.tnyeldiket.ltlkp

1cpt       395  knvpirftka......
1oxa       382  dhlpvrldg.......
1phd       364  qalplvwdpattkav.
2hpdA      419  egfvvkakskkiplgg

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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