1thm_ref1 - reference 1


Name                 serine protease				

Number of sequences              4
Alignment Length                 292
Longest Sequence                 279
Shortest Sequence                269
Average Percent Identity         50
Maximum Percent Identity         69
Minimum Percent Identity         38

Sequence Name    SWISSPROT Accession
1st3                 P29599         
1sbc                 P00780         
1sbt                 P00782         
2prk                 P06873         

Family   1st3 1sbc 1sbt
Family   2prk


1st3         1  .GQS.VPWGISRVqa.....paahnrgltGSGVKVAVLDTGI.STHPDLn
1sbc         1  .AQT.VPYGIPLIka.....dkvqaqgfkGANVKVAVLDTGIQASHPDLn
1sbt         1  .AQS.VPYGVSQIka.....palhsqgytGSNVKVAVIDSGIDSSHPDLk
2prk         1  aAQTNAPWGLARIsstspgtstyyydesaGQGSCVYVIDTGIEASHPEF.

1st3        43  irggasfvpgepst.qDGNGHGTHVAGTIAALNNSIGVLGVAPSAELYAV
1sbc        44  vvggasfvageayn.tDGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAV
1sbt        44  vaggasmvpsetpnfqDDNSHGTHVAGTVAALNNSIGVLGVAPSSALYAV
2prk        50  .egraqmvktyyyssrDGNGHGTHCAGTVGS.....RTYGVAKKTQLFGV

1st3        92  KVLGADGRGAISSIAQGLEWagnng.......mhVANLSLGSPSPSATLE
1sbc        93  KVLNSSGSGSYSGIVSGIEWattng.......mdVINMSLGGASGSTAMK
1sbt        94  KVLGDAGSGQYSWIINGIEWaiann.......mdVINMSLGGPSGSAALK
2prk        94  KVLDDNGSGQYSTIIAGMDFvasdknnrncpkgvVASLSLGGGY.SSSVN

1st3       135  QAVNSATSRGVLVVAASGNsga....ssisy.PARYANAMAVGATDQNNN
1sbc       136  QAVDNAYARGVVVVAAAGNsgnsgstntigy.PAKYDSVIAVGAVDSNSN
1sbt       137  AAVDKAVASGVVVVAAAGNegstgssstvgy.PGKYPSVIAVGAVDSSNQ
2prk       143  SAAARLQSSGVMVAVAAGNnna....darnysPASEPSVCTVGASDRYDR

1st3       180  RASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVK
1sbc       185  RASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALIL
1sbt       186  RASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALIL
2prk       189  RSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLM

1st3       230  QKNPSWSNVQIRNHLkntatslgstnl.ygs.glvnaeaatr
1sbc       235  SKHPNLSASQVRNRLsstatylgssfy.ygk.glinveaaaq
1sbt       236  SKHPNWTNTQVRSSLqntttklgdsfy.ygk.glinvqaaaq
2prk       239  TLGKTTAASACR.YIadtankgdlsnipfgtvnllaynnyqa

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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