1ajsA_ref3 - reference 3


Name                 aminotransferase										

Number of sequences              28
Alignment Length                 473
Longest Sequence                 396
Shortest Sequence                340
Average Percent Identity         20
Maximum Percent Identity         68
Minimum Percent Identity         6

Sequence Name    SWISSPROT Accession
1ajsA                P00503         
aat2_arath           P46645         
aatm_human           P00505         
aatc_yeast           P23542         
aatm_lupan           P26563         
aat_haein            P44425         
aat_ecoli            P00509         
tyrb_ecoli           P04693         
phhc_pseae           P43336         
2dkb                 P16932         
gabt_mycle           P40829         
argd_bacsu           P36839         
oat_human            P04181         
oat_bacsu            P38021         
argd_anasp           P54752         
oat_ecoli            P42588         
2gsaA                P24630         
gsa_pseae            P48247         
gsa_metja            Q58020         
gsab_bacsu           P71084         
gsa_helpy            P56115         
gsa_mycle            P46716         
1ax4A                P28796         
tnaa_entae           Q59342         
tna2_symth           P31015         
tnaa_ecoli           P00913         
tpl_erwhe            P31011         
tpl_symth            Q08897         

Family   1ajsA aat2_arath aatm_human aatc_yeast aatm_lupan aat_haein aat_ecoli tyrb_ecoli phhc_pseae
Family   2dkb gabt_mycle argd_bacsu oat_human oat_bacsu argd_anasp oat_ecoli
Family   2gsaA gsa_pseae gsa_metja gsab_bacsu gsa_helpy gsa_mycle
Family   1ax4A tnaa_entae tna2_symth tnaa_ecoli tpl_erwhe tpl_symth


1ajsA        1  .........LPVVRKVEqriannsslnheylp...ilglaefrtCASRLA
aat2_arath   1  rteegkplvLDVVRKAEqqlvndpsrvkeyip...ivgisdfnkLSAKLI
aatm_human   1  rddngkpyvLPSVRKAEaqiaaknl.dkeylp...igglaefckASAELA
aatc_yeast   1  rddngkpwvLPSVKAAEklihndssynheylg...itglpsltsNAAKII
aatm_lupan   1  rteelqpyvLKVVNKAEnlmlergq.nkeyla...ieglaafnkATAELL
aat_haein    1  kdaqgttpiMHAVKEAEkrlfdkek.tknylt...idgiadyneQTKALL
aat_ecoli    1  kdetgktpvLTSVKKAEqyllenet.tknylg...idgipefgrCTQELL
tyrb_ecoli   1  ynedgiipqLQAVAEAEarlnaqphgaslylp...meglncyrhAIAPLL
phhc_pseae   1  kdaqgltpiLRSVKLAEqrlveqet.tksyvg...ghgdalfaaRLAELA
2dkb         1  .........HPEIVSVIgeyagkl..dhlfseml.srpvvdlatRLANIT
gabt_mycle   1  ..vttignsSPRVVDAVraqvadf..thtcfiitpyeeyvavteQLNRIT
argd_bacsu   1  ..vsnlghcHEAVTEAVkkqldsv..whvsnlfq.nslqeqaaqKLAGHS
oat_human    1  ..avnqghcHPKIVNALksqvdkl..tltsrafy..nnvlgeyeEYITKL
oat_bacsu    1  ..avnqghrHPKIIQALkdqadki..tltsrafh..ndqlgpfyEKTAKL
argd_anasp   1  ..tctlghaHPAMVEAVtrqiqkl..hhvsnlyy..ipeqgelaQWIIQH
oat_ecoli    1  ..ifnvghrNPVVVSAVqnqlakq..plhsqell.dplramlakTLAALT
2gsaA        1  .........HPEVIEALkvamek...gtsfga...pcalenvlaEMVNDA
gsa_pseae    1  ..pmilghsHPDVLDAVrrqldh...glsyga...ptalevemaDLVCSM
gsa_metja    1  ..pmvlghaNDAVIKAVkeqlel...gsaygc...ptekeiilaKEVVKR
gsab_bacsu   1  ..piitghaHPHITEAIkkaaen...gvlygt...ptkhevtfaKMLKEA
gsa_helpy    1  ..plifghaDEEIEENIinalkk...gtsfga...ptelettlaKEIISC
gsa_mycle    1  ..pmilghaHPAVVDAVatvaas...glsfga...ptpaetqlaAEIIGR
1ax4A        1  .......amSDHQWAAMitg......deayag....srnyydlkDKAKEL
tnaa_entae   1  .tdsgtgamSDHQWAGLmmg......deayag....srnyqhlcEKVKEI
tna2_symth   1  .tdsgtgamSQFQWSAMmlg......desyag....assyyrlkEAVTDI
tnaa_ecoli   1  .tdsgtgavTQSMQAAMmrg......deaysg....srsyyalaESVKNI
tpl_erwhe    1  .tdsgtnamSDKQWAGMmig......deayag....senfyhleKTVKEL
tpl_symth    1  .tdsgtnamSDRQWGALmmg......deayag....arsffrleEAVREI

1ajsA       39  LGddspalqekrvgGVQSLGGTGALRIGAEFLARWyn...gtnnkdtpVY
aat2_arath  48  LGadspaitesrvtTVQCLSGTGSLRVGAEFLKTHyh........qsvIY
aatm_human  47  LGensevlksgrfvTVQTISGTGALRIGASFLQRFfk.......fsrdVF
aatc_yeast  48  FGtqsdafqedrviSVQSLSGTGALHISAKFFSKFfp........dklVY
aatm_lupan  47  LGadnpaikqqrvaTVQGLSGTGSLRLGAALIERYfp........gakVL
aat_haein   47  FGkdseviqsnrarTVQSLGGTGALRIAAEFIKRQtk........aqnVW
aat_ecoli   47  FGkgsalindkrarTAQTPGGTGALRVAADFLAKNts........vkrVW
tyrb_ecoli  48  FGadhpvlkqqrvaTIQTLGGSGALKVGADFLKRYfp........esgVW
phhc_pseae  47  LGaaspllleqradATQTPGGTGALRLAGDFIAHClp........grgIW
2dkb        39  PP........gldrALLLSTGAESNEAAIRMAKLVtg........kyeIV
gabt_mycle  47  PG.......sgekrSVLFNSGAEAVENSIKVARSYt........rkpaVV
argd_bacsu  46  AG..........dlVFFCNSGGQANEGAYKLARKAt........gktkII
oat_human   45  FN.........yhkVLPMNTGVEAGETACKLARKWgytvkgiqkykakIV
oat_bacsu   45  TG.........kemILPMNTGAEAVESAVKAARRWayevkgvadnqaeII
argd_anasp  45  S.........cadrVFFCNSGAEANEAAIKLARKYahtv..ldiekpiIL
oat_ecoli   46  PG........klkySFFCNSGTESVEAALKLAKAYq.....sprgkftFI
2gsaA       36  VP........siemVRFVNSGTEACMAVLRLMRAYtg........rdkII
gsa_pseae   43  VP........smemVRMVSSGTEATMSAIRLARGYt........grdsII
gsa_metja   43  VP........caemVRFVNSGTEATMSAIRLARGVt........grkkII
gsab_bacsu  43  IP........amdkVRFVNSGTEAVMTTIRVARAYt........grtkII
gsa_helpy   43  YE........gldkVRLVSSGTEATMSAIRLARAYs........qkddLI
gsa_mycle   43  MA........pverIRLVNSGTEATMSAVRLARGFt........grtkII
1ax4A       34  FN.........ydyIIPAHQGRGAENILFPVLLKYkq...kegkaknpVF
tnaa_entae  40  IG.........ypyTIPTHQGRGAEQILFPSLIARrk.......sahpVF
tna2_symth  40  TG.........yeyVLPTHQGRGAEKSAFAQLITRpg..........mYV
tnaa_ecoli  40  FG.........yqyTIPTHQGRGAEQIYIPVLIKKreq.ekgldrskmVA
tpl_erwhe   40  FG.........fkhIVPTHQGRGAENLLSQLAIKPgq...........YV
tpl_symth   40  YG.........fkyVVPTHQGRGAEHLISRILIKPgd...........YI

1ajsA       86  VSs..ptwenhngvftta..............gfkdirsyrywdtekr..
aat2_arath  90  IPk..ptwgnhpkvfnla..............gls.veyfryydpatr..
aatm_human  90  LPk..ptwgnhtpifrda..............gmq.lqgyryydpktc..
aatc_yeast  90  LSk..ptwanhmaifenq..............glk.tatypywanetk..
aatm_lupan  89  ISa..ptwgnhknifnda..............rvp.wseyryydpktv..
aat_haein   89  ISt..ptwpnhnaifnav..............gmt.ireyryydaerk..
aat_ecoli   89  VSn..pswpnhksvfnsa..............gle.vreyayydaenh..
tyrb_ecoli  90  VSd..ptwenhvaifaga..............gfe.vstypwydeatn..
phhc_pseae  89  LSd..ptwpihetlfaaa..............glk.vshypyvsadnr..
2dkb        73  GFaqswhgmtgaaasatysag..rkgvgpaavgsfaipapftyrprfe.r
gabt_mycle  82  AFdhayhgrtnltmaltaksmpyksgfgpfapeiyraplsypyrdgllnk
argd_bacsu  78  TFlqsfhgrtyagmaatgqdk.iktgfgpmlggfhyl.............
oat_human   86  FAagnfwgrtlsaissstdpt.sydgfgpfmpgfdii.............
oat_bacsu   86  ACvgnfhgrtmlavslsseee.ykrgfgpmlpgikli.............
argd_anasp  84  TAnasfhgrtlatitatgqak.yqkyfdplvpgfhyv.............
oat_ecoli   83  ATsgafhgkslgalsatakst.frkpfmpllpgfrhv.............
2gsaA       70  KFegcyhghadmflvk........agsgvatlglpsspgvpkkttantlt
gsa_pseae   77  KFegcyhghsdsllvk........agsgsltfgvpnspgvpaafakhtlt
gsa_metja   77  KFdgayhgahdyvlvk........sgsgalthghpnspgipeettkntil
gsab_bacsu  77  KFagcyhghsdlvlva........agsgpstlgtpdsagvpksianevit
gsa_helpy   77  KFegcyhghsdsllvk........agsgcatfgspsslgvpndfskhtlv
gsa_mycle   77  KFsgcyhghvdallad........agsgvatlslpsspgvtgaaaadtiv
1ax4A       72  ISn..fhfdttaahveln..............gckainivtekafdsety
tnaa_entae  74  ISn..fhfdttaahveln..............gakainvvtpkafdttsw
tna2_symth  71  LSn..mffdttrghvqla..............g.rpidllldv..pteey
tnaa_ecoli  80  FSn..yffdttqghsqin..............gctvrnvyikeafdtgvr
tpl_erwhe   70  AGn..myftttrfhqekn..............gatfvdivrdeahdasln
tpl_symth   70  PGn..myftttrthqelq..............ggtfvdviideahdpqas

1ajsA      118  ......glDLQGFLSDLenap....efSIFVLhacahnptgtdpt.peq.
aat2_arath 121  ......glDFKGLLEDLgaap....sgAIVLLhacahnptgvdpt.seq.
aatm_human 121  ......gfDFTGAVEDIskip....eqSVLLLhacahnptgvdpr.peq.
aatc_yeast 121  ......slDLNGFLNAIqkap....egSIFVLhscahnptgldpt.seq.
aatm_lupan 120  ......glDFEGMIEDIkaap....egTFVLLhgcahnptgidpt.peq.
aat_haein  120  ......alDWEHLLEDLsqas....egDVVLLhgcchnptgidpt.peq.
aat_ecoli  120  ......tlDFDALINSLneaq....agDVVLFhgcchnptgidpt.leq.
tyrb_ecoli 121  ......gvRFNDLLATLktlp....arSIVLLhpcchnptgadlt.ndq.
phhc_pseae 120  .......lDVEAMLAGLerip....qgDVVLLhacchnptgfdls.hdd.
2dkb       120  ngaydylaELDYAFDLIdrqs..sgnlAAFIAepil..ssggiielpdgy
gabt_mycle 132  dlatdgklAGARAINVIekqv.gaddlAAVIIepiq..geggfivpaegf
argd_bacsu 114  .pyn....DPSAFKALGee.....gdiAAVMLetvq..geggvnpasaef
oat_human  122  .pyn....DLPALERALqd.....pnvAAFMVepiq..geagvvvpdpgy
oat_bacsu  122  .pyg....DVEALRQAIt......pntAAFLFepiq..geagivippegf
argd_anasp 120  .nyn....DISAVEAAIseldegdyrvAAILIeplq..geggvrpgdvey
oat_ecoli  119  .pfg....NIEAMRTALneckktgddvAAVILepiq..geggvilpppgy
2gsaA      112  tpyn....DLEAVKALFaenp...geiAGVILepiv..gnsgfivpdagf
gsa_pseae  119  lpfn....DIEAVRKTLgevg...kevACIIVepva..gnmncvppapgf
gsa_metja  119  ipfn....DEDAVKKAInenk...deiACIIVepim..gnvgcilpkegy
gsab_bacsu 119  vpfn....DIDSYKAALekwg...seiAAVLVepiv..gnfgivepkegf
gsa_helpy  119  aryn....DLNSTEECFkk.....gnvGCVIIepia..gnmglvpaqkef
gsa_mycle  119  lpyn....DIEAVRQTFarlg...dqiAAVITeasp..gnmgvvppapgy
1ax4A      106  ddwk.gdfDIKKLKENIaqhg..adniVAIVStvtcn.saggqpv.smsn
tnaa_entae 108  ydwk.gnfDIDLLKATIaehg..aenvAAIITtvtcn.ssggqpv.slan
tna2_symth 102  hpfk.gnmDTARLEAFIqehg..aeniACIVMtvtnn.saggqpv.sman
tnaa_ecoli 114  ydfk.gnfDLEGLERGIeevg..pnnvPYIVAtitsn.saggqpv.slan
tpl_erwhe  104  lpfk.gdiDLNKLATLIkekg..aeniAYICLavtvn.laggqpv.sman
tpl_symth  104  hpfk.gnvDIAKFEALIdrvg..rdkiPYINValtvn.maggqpv.sman

1ajsA      156  WKQIASVMKRRFLFPFFDSAyqgfasg.....nlekdawairyfvseg..
aat2_arath 159  WEQIRQLMRSKSLLPFFDSAyqgfasg.....sldtdaqsvrtfvadg..
aatm_human 159  WKEIATVVKKRNLFAFFDMAyqgfasg.....dgdkdawavrhfieqg..
aatc_yeast 159  WVQIVDAIASKNHIALFDTAyqgfatg.....dldkdayavrlgveklst
aatm_lupan 158  WEKIADVIQEKNHIPFFDVAyqgfasg.....sldedaasvrlfvarg..
aat_haein  158  WQELAALSAKNGWLPLFDFAyqglang......ldedayglrafaanh..
aat_ecoli  158  WQTLAQLSVEKGWLPLFDFAyqgfarg......leedaeglrafaamh..
tyrb_ecoli 159  WDAVIEILKARELIPFLDIAyqgfgag......meedayairaiasag..
phhc_pseae 157  WRRVLDVVRRRELLPLIDFAyqgfgdg......leedawavrlfagel..
2dkb       166  MAALKRKCEARGMLLILDEAqtgvgrt.......gtmfacqrdgvtp...
gabt_mycle 179  LATLLDWCRKNNVMFIADEVqtgfart.......gamfacehdgivp...
argd_bacsu 152  LSAVQSFCKEKQALLIIDEIqtgigrt.......gkgfayehfglsp...
oat_human  160  LMGVRELCTRHQVLFIADEIqtglart.......grwlavdyenvrp...
oat_bacsu  159  LQEAAAICKEENVLFIADEIqtglgrt.......gktfacdwdgivp...
argd_anasp 163  FQKLRQICDDTGILLMFDEVqvgmgrs.......gklwgyeylgvep...
oat_ecoli  162  LTAVRKLCDEFGALMILDEVqtgmgrt.......gkmfacehenvqp...
2gsaA      153  LEGLREITLEHDALLVFDEVmtgfria........yggvqekfgvtp...
gsa_pseae  160  LEGLREACDEHGVVLIFDEVmtgfrva........lggaqayygvtp...
gsa_metja  160  LEFLREITEENDILLIFDEVitgfrla........kggaqeyfgvvp...
gsab_bacsu 160  LEQVNELTHNAGALVIYDEVitafrfm........yggaqdllqvkp...
gsa_helpy  158  LLGLKALCEKYQAVLILDEVmsgfras........lsgsqefygvvp...
gsa_mycle  160  NAALRAITAEHGALLIIDEVmtgfrvs........rsgwygldpvaa...
1ax4A      151  LKEVYEIAKQHGIFVVMDSArfcenayfikardpkyknatikevifdmyk
tnaa_entae 153  MREVYQIARQNNIPVVIDSArfcenawfikqreegyadksvkeiilemyq
tna2_symth 147  IRETSRIARKYGILLLFDVAryaenchfirmreegyadkapidiaremfs
tnaa_ecoli 159  LKAMYSIAKKYDIPVVMDSArfaenayfikqreaeykdwtieqitretyk
tpl_erwhe  149  MRAVHEMASTYGIKIFYDATrcvenayfikeqeagyenvsikdivhemfs
tpl_symth  149  LREVRKVCDRHGIRMWSDATravenayfikereegyqdkpvreilkemms

1ajsA      199  .fELFCAqsfsknFGLYne..rvgnltvvak....epdsilrvLSQMQki
aat2_arath 202  .gECLIAqsytknMGLYge..rvgalsivck....sadvaskvESQVKlv
aatm_human 202  .iNVCLCqsyaknMGLYge..rvgaftmvck....dadeakrvESQLKil
aatc_yeast 204  vsPVFVCqsfaknAGMYge..rvgcfhlaltkqaqnktikpavTSQLAki
aatm_lupan 201  .lEVLVAqsysknLGLYae..rigainviss....spesaarvKSQLKri
aat_haein  200  .kELLVAssfsknFGLYne..rvgaftlvae....naeiastsLTQVKsi
aat_ecoli  200  .kELIVAssysknFGLYne..rvgactlvaa....dsetvdraFSQMKaa
tyrb_ecoli 201  .lPALVSnsfskiFSLYge..rvgglsvmce....daeaagrvLGQLKat
phhc_pseae 199  .pEVLVTsscsknFGLYrd..rvgalivcaq....naekltdlRSQLAfl
2dkb       206  ..DILTLs...ktLGAGl...plaaivts............aaIEERAhe
gabt_mycle 219  ..DLICTa...kgIADG...lplaavtgr............aeIMNAPh.
argd_bacsu 192  ..DIITVa...kgLGNG...fpvgavigk............kqLGEAFt.
oat_human  200  ..DIVLLg...kaLSGG..lypvsavlcd............ddIMLTIk.
oat_bacsu  199  ..DMYILg...kaLGGG..vfpisciaad............reILGVFn.
argd_anasp 203  ..DIFTSa...kgLGGG...ipigamms.............kkFCDVFq.
oat_ecoli  202  ..DILCLa...kaLGGG..vmpigatiat............eeVFSVLfd
2gsaA      192  ..DLTTLg...kiIGGGl...pvgayggk............reIMQLVap
gsa_pseae  199  ..DLSTFg...kiIGGG...mpvgafggk............reIMQQIsp
gsa_metja  199  ..DIATLg...kiLGGG...fpigaivgr............reLMEQFsp
gsab_bacsu 199  ..DLTALg...kiIGGG...lpigayggk............qeIMEQVap
gsa_helpy  197  ..DLVTFg...kvIGAG...lplacfggr............aeIMDLLsp
gsa_mycle  199  ..DLFIFg...kvMSGG...mpaaafggr............aeVMERLap
1ax4A      201  yaDALTMsa..kxDPLLn....igglvair.....dneeiftlARQRCvp
tnaa_entae 203  ygDMLTMsa..kkDPMVn....igglccfr.....ddeelfneVRIRCvp
tna2_symth 197  ygDGLMMsa..kkDALVn....iggllafk......deelytrVGGTVvp
tnaa_ecoli 209  yaDMLAMsa..kkDAMVp....mggllcmkdd...sffdvyteCRTLCvv
tpl_erwhe  199  yaDGCTMsg..kkDCLVn....iggflcmn......deemfsaAKELVvv
tpl_symth  199  yfDGCTMsg..kkDCLVn....iggflamn......eewilqkAREQVvi

1ajsA      242  vrvtwsn........ppAQGARIVartlsd.pelfheWTGNVKTMADRIl
aat2_arath 245  vrpmyss........ppIHGASIVatilks.sdmynnWTIELKEMADRIk
aatm_human 245  irpmysn........ppLNGARIAaailnt.pdlrkqWLQEVKGMADRIi
aatc_yeast 252  irsevsn........ppAYGAKIVakllet.pelteqWHKDMVTMSSRIt
aatm_lupan 244  arpmysn........ppVHGARIVadivgn.palfdeWKVEMEMMAGRIk
aat_haein  243  irtlysn........paSHGGATVatvlnd.aqlrqeWENELTEMRERIk
aat_ecoli  243  iranysn........ppAHGASVVatilsn.dalraiWEQELTDMRQRIq
tyrb_ecoli 244  vrrnyss........ppNFGAQVVaavlnd.ealkasWLAEVEEMRTRIl
phhc_pseae 242  arnlwst........ppAHGAEVVaailgd.selkglWQEEVEGMRSRIa
2dkb       236  lgylfyt.thvsdplpaAVGLRVLdvvqr..dglvarANVMGDRLRRGLl
gabt_mycle 248  .vsglgg.tfggnpvacAAALATIttiend..gliqrAQQIERLITDRLl
argd_bacsu 221  .pgshgt.tfggnmlamAAVNATLqivfqp..dflqeAADKGAFLKEQLe
oat_human  230  .pgehgs.tyggnplgcRVAIAALevleee..nlaenADKLGIILRNELm
oat_bacsu  229  .pgshgs.tfggnplacAVSIASLevlede..kladrSLELGEYFKSELe
argd_anasp 231  .pgehas.tfggnpfacGVALAVCqtlere..nilqnVQDRGEQLRSGLr
oat_ecoli  233  npflhtt.tfggnplacAAALATInvlleq..nlpaqAEQKGDMLLDGFr
2gsaA      222  agpmyqagtlsgnplamTAGIKTLellr.q.pgtyeyLDQITKRLSDGLl
gsa_pseae  229  lgpvyqagtlsgnplamAAGLTTLrlisrp..gfhdeLTAYTTRMLDGLq
gsa_metja  229  lgaiyqagtfngnpisiTAGIATLkqlddr...fykeTARTAKILADTLr
gsab_bacsu 229  lgpayqagtmagnpasiLSGIACLevlkek..gvyekLDHLGAMLEEGIm
gsa_helpy  227  igsvyqagtlsgnplavCAGLSALykikrdk.tlytrLDALAIRLTQGLq
gsa_mycle  229  lgpvyqagtlsgnpvamAAGLATLraaad...avyatLDRNADRLVAMLs
1ax4A      240  megfvtyggla..grdmAAMVQGLee......gteeeYLHYRIGQVKYLg
tnaa_entae 242  megfvtyggla..grdmEALAIGLee......gtnedYLAYRINQVEYLg
tna2_symth 235  fegfltyggla..grdlEAMAVGLre......aldpdYLAYRVGQVEYLg
tnaa_ecoli 250  qegfptyggle..ggamERLAVGLyd......gmnldWLAYRIAQVQYLv
tpl_erwhe  237  yegmpsyggla..grdmEAMAIGLre......amqyeYIEHRVKQVRYLg
tpl_symth  237  fegmptyggla..grdmEAIAQGIye......mvdddYIAHRIHQVRYLg

1ajsA      283  smrselrarlea.lktpgtwnhitdqiGMFSFTGln..............
aat2_arath 286  smrqqlfeaiqa.rgtpgdwshiikqiGMFTFTGln..............
aatm_human 286  gmrtqlvsnlkk.egsthnwqhitdqiGMFCFTGlk..............
aatc_yeast 293  kmrhalrdhlvk.lgtpgnwdhivnqcGMFSFTGlt..............
aatm_lupan 285  nvrqqlydsisskdksgkdwsfilkqiGMFSYTGln..............
aat_haein  284  kmrhlfvqllke.ygaeqdfsfiieqnGMFSFSGlt..............
aat_ecoli  284  rmrqlfvntlqe.kganrdfsfiikqnGMFSFSGlt..............
tyrb_ecoli 285  amrqelvkvlst.empernfdyllnqrGMFSYTGls..............
phhc_pseae 283  slriglvealap.hglaerfahvgaqrGMFSYTGls..............
2dkb       283  dlmer...........fdcigdvrgr.GLLLGVEivkd.....rrtkepa
gabt_mycle 294  rlqda...........ddrigdvrgr.GAMIAVElvks......gtaepd
argd_bacsu 267  aelks............pfvkqirgk.GLMLGIEc...............
oat_human  276  klps.............dvvtavrgk.GLLNAIVi...........ketk
oat_bacsu  275  sids.............pvikevrgr.GLFIGVEl...............
argd_anasp 277  aiaak..........yphhltevrgw.GLINGLEl...........aadi
oat_ecoli  280  qlare..........ypdlvqeargk.GMLMAIEfvd........neigy
2gsaA      270  aiaqe...........tghaacggqvsGMFGFFFtegp.vhnyedakksd
gsa_pseae  277  qrada...........agipfvttqagGMFGLYFsgadaivtfedvmasd
gsa_metja  276  eladk...........hnikakvyniaSMFQIYFndke.vvnyeiakqsd
gsab_bacsu 277  khaet...........hgititvnrlkGALTVYFsdek.venyeqaersd
gsa_helpy  276  ksaqn...........ynialetlnmgSMFGFFFnena.vhdfddalksd
gsa_mycle  276  ealtd...........agvphqipragNMFSVFFseap.vtdfasacnsq
1ax4A      282  drlre...........agipiqyptg.GHAVFVDckkl.vpqipgdqf..
tnaa_entae 284  erlre...........ggipiqyptg.GHAVFVDakll.lphippeqf..
tna2_symth 277  nllrs...........agipiqwpvg.GHAVFIDaakf.lphipwdqf..
tnaa_ecoli 292  dglee...........igvvcq.qag.GHAAFVDagkl.lphipadqf..
tpl_erwhe  279  dklre...........agvpiveptg.GHAVFLDarrf.cphltqdqf..
tpl_symth  279  eqlle...........agipivqpig.GHAVFLDaraf.lphipqdqf..

1ajsA      318  ...pkqVEYLINQKHIYLLps.....................gRINMCg.
aat2_arath 321  ...keqVEFMTKEFHIYMTsd.....................gRISMAg.
aatm_human 321  ...peqVERLIKEFSIYMTkd.....................gRISVAg.
aatc_yeast 328  ...pqmVKRLEETHAVYLVas.....................gRASIAg.
aatm_lupan 321  ...knqSDNMTNKWHVYMTkd.....................gRISLAg.
aat_haein  319  ...geqVDRLKNEFAIYAVrs.....................gRINVAg.
aat_ecoli  319  ...keqVLRLREEFGVYAVas.....................gRVNVAg.
tyrb_ecoli 320  ...aaqVDRLREEFGVYLIas.....................gRMCVAg.
phhc_pseae 318  ...pqqVARLRDEHAVYLVss.....................gRANVAg.
2dkb       316  dglgakITRECMNLGLSMNiv.............qlpgmggvfRIAPPl.
gabt_mycle 326  peltekVATAAHATGVIILtc...............gmfgniiRLLPPl.
argd_bacsu 289  dgpvadIIAELQTLGLLVLpa.................gperdSAAAPl.
oat_human  301  dwdawkVCLRLRDNGLLAKpt.................hgdiiRFAPPl.
oat_bacsu  296  teaarpYCERLKEEGLLCKet.................hdtviRFAPPl.
argd_anasp 305  pltaadVVKAAINEGLLLVpa.................gpkvvRFVPPl.
oat_ecoli  311  nfasemFRQRVLVAGTLNNa....................ktiRIEPPl.
2gsaA      308  lqkfsrFHRGMLEQGIYLAps.................qfeagFTSLAh.
gsa_pseae  316  verfkrFFHLMLDGGVYLAps.................afeagFTSIAh.
gsa_metja  314  tekfmkYFWRLLEKGVFVPps.................qfeccFTSIKh.
gsab_bacsu 315  getfstFFKLMLERGINLAps.................kyeawFITTAh.
gsa_helpy  314  temfakFHQKMLFKGVYLAcs.................sfetgFICEPm.
gsa_mycle  314  vwrypaFFHALLDAGVYPPcs.................tfeawFVSAAl.
1ax4A      317  .paqavINALYLESGVRAVeigsfllgrdpatgeqkhadmefmRLTIArr
tnaa_entae 319  .pahalNNELYLEAGIRSVeigslllgrdpetgkqkaspmellRLTIPrr
tna2_symth 312  .pghalTVALYQEGGVRTVevgslvmgrdpetgenvrspfeftRLAIPrr
tnaa_ecoli 326  .paqalACELYKVAGIRAVeigsfllgrdpktgkqlpcpaellRLTIPra
tpl_erwhe  314  .paqslAASIYMETGVRSMergivsagrsketgenhrpkletvRLTIPrr
tpl_symth  314  .paqalAAALYVHSGVRAMergivsagrnpqtgehnypklelvRLTIPrr

1ajsA      343  .lttknLDYVATSIheavtkiqx
aat2_arath 346  .lssktVPHLADAMhaavtrl..
aatm_human 346  .vtssnVGYLAHAIh.qvtk...
aatc_yeast 353  .lnqgnVEYVAKAIdevv.....
aatm_lupan 346  .lslakCEYLADAIidsfhyvs.
aat_haein  344  .itednIRYLCESIvkvl.....
aat_ecoli  344  .mtpdnMAPLCEAIvavl.....
tyrb_ecoli 345  .lntanVQRVAKAFaavm.....
phhc_pseae 343  .lharrLGRLAQAIaq.......
2dkb       352  tvsedeIDLGLSLLgqaieral.
gabt_mycle 360  tisdelLAEGLDILsril.....
argd_bacsu 321  tvtkdeIAEAVSKLkqaiah...
oat_human  333  vikedeLRESIEIInkti.....
oat_bacsu  328  iiskedLDWAIEKIkhvlrna..
argd_anasp 337  ivteaeINTALKLLekala....
oat_ecoli  340  tltieqCELVIKAArkala....
2gsaA      340  ..teedIDATLAAArtvmsal..
gsa_pseae  348  ..gdkeLEITLNAAekafaa...
gsa_metja  346  ..ddevVDKTIKAMedvfeg...
gsab_bacsu 347  ..teqdIKDTLTAVedafkh...
gsa_helpy  346  ..teemIDLTIAKAdesfde...
gsa_mycle  346  ..ddaaFGRIVDALpgaaaa...
1ax4A      366  vytndhMDYIADALiglkekfa.
tnaa_entae 368  vytndhMDYIADALiavkaraa.
tna2_symth 361  vytnlhLEDVAETVinafqkre.
tnaa_ecoli 375  tytqthMDFIIEAFkhvkenaa.
tpl_erwhe  363  vytyahMDVVADGIiklyqhke.
tpl_symth  363  vytdrhMDVVAYSVkhlwkerd.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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