1havA_ref1 - reference 1


Name                 hepatitis proteinase							

Number of sequences              5
Alignment Length                 237
Longest Sequence                 199
Shortest Sequence                136
Average Percent Identity         15
Maximum Percent Identity         21
Minimum Percent Identity         10

Sequence Name    SWISSPROT Accession
1havA                P06441         
1agjA                P09331         
5ptp                 P00760         
2sga                 P00776         
1svpA                P27285         

Family   1havA 1agjA 5ptp 2sga 1svpA


1havA        1  .knlvqfgvgeknGSVRWVmnalgvk.ddwLLVPSHAykfekdyemmefy
1agjA        1  .ntignvfvk...GQTSATgvlig...kntVLTNRHIakfa.ngdpskvs
5ptp         1  .pyqvslns....GYHFCGgslin...sqwVVSAAHCy.......ksgiq
2sga         1  iaggeaitt...gGSRCSLgfnvsvngvahALTAGHCtnis.......as
1svpA        1  .drlfdvkne..dGDVIGHalame....gkVMKPLHVk..........gt

1havA       49  fnrg............gtyysisagnvviqsldvgf...qDVVLMKVpti
1agjA       43  frpsintddngntetpygeye...vkeilqepfgag...vDLALIRLkpd
5ptp        36  vrlge...dninv.vegneqfisasksivhpsynsntlnnDIMLIKLksa
2sga        41  wsi....................gtrtgtsfp......nnDYGIIRHsnp
1svpA       34  idhp................vlsklkftkssa.......yDMEFAQLpvn

1havA       84  p.......kfrditqhfikkgdvpral.nrlatlvttvng........tp
1agjA       87  qngvslgdkisp.....akigtsndlkdgdkleligypfdhkv.....nq
5ptp        82  aslns...rvas.....islptsc.asagtqclisgwgntkssgtsypdv
2sga        65  aaad...grvylyngsyqdittagnafvgqavqrsgst..........tg
1svpA       61  m.......rsea.....ftytseh....pegfynwh..............

1havA      118  mlisegplkmeekatyvhkkndgt.tvdltvdqawrgkgeglpGMCGGAL
1agjA      127  mhrseielttlsr..............glryygf......tvpGNSGSGI
5ptp       123  lkclkapilsdsscksayp...gqitsnmfcagyleggkdscqGDSGGPV
2sga       102  lrsgsvtgl...natvnyg..ssgivygmiqtnv.....caqpGDSGGSL
1svpA       81  hgavqysgg.................rftiprg......vggrGDAGRPI

1havA      167  VSSnqsiqnAILGIHVAGg......nsilvaklvt..
1agjA      157  FNS....ngELVGIHSSKvshldrehqinygvgigny
5ptp       170  VCS.....gKLQGIVSWGsgcaqk.nkpgvytkvcn.
2sga       142  FAG.....sTALGLTSGGsgncrt.ggttfyqpvte.
1svpA      108  MDN....sgRVVAIVLGGadeg...trtalsvvtwn.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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