1ycc_ref4 - reference 4


Name                 cytochrome c

Number of sequences              9
Alignment Length                 234
Longest Sequence                 190
Shortest Sequence                105
Average Percent Identity         36
Maximum Percent Identity         57
Minimum Percent Identity         21

Sequence Name    SWISSPROT Accession
1ycc                 P00044         
1ccr                 P00055         
1cry                 P00083         
1hro                 P00080         
2c2c                 P00092         
155c                 P00096         
1c2r                 P00094         
1cxa                 P00095         
1etp                 Q52369         

Family   1ycc 1ccr 1cry 1hro 2c2c 155c 1c2r 1cxa
Family   1etp


1ycc         1  ...tefkaGSAKKGATLFktrCLQCHtv..ekgg.....phkvgpnlhgi
1ccr         1  asfseappGNPKAGEKIFktkCAQCHtv..dkga.....ghkqgpnlngl
1cry         1  ........QDAASGEQVFk.qCLVCHsi..gpga.....knkvgpvlngl
1hro         1  ....sappGDPVEGKHLFhtiCITCHtd..ikga......nkvgpslygv
2c2c         1  .......eGDAAAGEKVSk.kCLACHtf..dqgg.....ankvgpnlfgv
155c         1  ......neGDAAKGEKEFn.kCKACHmiqapdgtdi..kggktgpnlygv
1c2r         1  ........GDAAKGEKEFn.kCKTCHsiiapdgteiv.kgaktgpnlygv
1cxa         1  ......qeGDPEAGAKAFn.qCQTCHvivddsgttiagrnaktgpnlygv
1etp         1  .......aGDAEAGQGKVa.vCGACHgv...dgns....papnfpklag.

1ycc        41  fgrhsgqaegys.ytdanikkn.....vlwdennmseyltnpkkyipg..
1ccr        44  fgrqsgttpgys.ystadknma.....viweentlydyllnpkkyipg..
1cry        35  fgrhsgtiegfa.ysdanknsg.....itwteevfreyirdpkakipg..
1hro        39  vgrhsgiepgyn.yseaniksg.....ivwtpdvlfkyiehpqkivpg..
2c2c        36  fentaahkdnya.ysesytemkakg..ltwteanlaayvknpkafvleks
155c        42  vgrkiaseegfk.ygegilevaeknpdltwteanlieyvtdpkplvkkmt
1c2r        41  vgrtagtypefk.ykdsivalgasg..fawteediatyvkdpgaflkekl
1cxa        44  vgrtagtqadfkgygegmkeagakg..lawdeehfvqyvqdptkflkeyt
1etp        35  ..........................qgeryllkqlqdikag..stpgap

1ycc        83  .......tkmafg.glkkekdrNDLITYLKKace................
1ccr        86  .......tkmvfp.glkkpqerADLISYLKEats................
1cry        77  .......tkmifa.gvkdeqkvSDLIAYIKQfnadgsk............
1hro        81  .......tkmgyp.gqpdpqkrADIIAYLETlk.................
2c2c        83  gdpkak.skmtfk..ltkddeiENVIAYLKTlk.................
155c        91  ddkgak.tkmtf....kmgknqADVVAFLAQddpda..............
1c2r        88  ddkkak.tgmaf....klakggEDVAAYLASvvk................
1cxa        92  gdakak.gkmtfk..lkkeadaHNIWAYLQQvavrp..............
1etp        57  egvgrkvlemtgmldplsdqdlEDIAAYFSSqkgsvgyadpalakqgekl

1ycc       109  ..................................................
1ccr       112  ..................................................
1cry       107  ..................................................
1hro       106  ..................................................
2c2c       113  ..................................................
155c       122  ..................................................
1c2r       117  ..................................................
1cxa       125  ..................................................
1etp       107  frggkldqgmpactgchapngvgndlagfpklggqhaaytakqltdfreg

1ycc       109  ..................................
1ccr       112  ..................................
1cry       107  ..................................
1hro       106  ..................................
2c2c       113  ..................................
155c       122  ..................................
1c2r       117  ..................................
1cxa       125  ..................................
1etp       157  nrtndgdtmimrgvaaklsnkdiealssyiqglh

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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