1bbt3_ref1 - reference 1


Name                 foot-and-mouth disease virus			

Number of sequences              5
Alignment Length                 233
Longest Sequence                 192
Shortest Sequence                168
Average Percent Identity         14
Maximum Percent Identity         24
Minimum Percent Identity         7

Sequence Name    SWISSPROT Accession
1bbt3                P03305         
1aym3                Q82122         
1bbt2                P03305         
1aym1                Q82122         
1bbt1                P03305         

Family   1bbt3 1aym3 1bbt2
Family   1aym1
Family   1bbt1


1bbt3        1  ..ftnlldvaeacptflrfe........ggvpyvttk.tds..drvlaqF
1aym3        1  ..vknliemcqv.dtlipinstqsnignvsmytvtls.pqtklaeeifaI
1bbt2        1  gletrvvqa....erffkth............lfdwvtsdsf.grc.hlL
1aym1        1  ..emsvesfl...grsgcih..........esvldiv..dnyndqsftkW
1bbt1        1  .qhtdvsfimd.rfvkvtpqn..........................qiN

1bbt3       38  DMSLaakhmsntfLAGLAQYYTQYSGTINLHFmftgpt....dakarymV
1aym3       47  KVDIashplattlIGEIASYFTHWTGSLRFSFmfcgta....nttlkvlL
1bbt2       33  ELPTdhk....gvYGSLTDSYAYMRNGWDVEVtavgnq....fnggcllV
1aym1       34  NINLqem....aqIRRKFEMFTYARFDSEITMvpsvaakdghighivmqY
1bbt1       23  ILDLmqvp.shtlVGGLLRASTYYFSDLEIAVkheg............dL

1bbt3       84  AYAPPGMEpp..ktpeaaahci..haewdtglnSKFTFSIPYLSAADYty
1aym3       93  AYTPPGIGkp..rsrkeamlgt..hvvwdvglqSTVSLVVPWISASQYrf
1bbt2       75  AMVPELCSiq.krelyqltlfp..hqfinprtnMTAHITVPFVGVNRYdq
1aym1       80  MYVPPGAPipttrddyawqsgtnasvfwqhg.qPFPRFSLPFLSIASAyy
1bbt1       60  TWVPNGAP.....ekaldnt.tnptayhk...aPLTRLALPYTAPHRVla

1bbt3      130  tas..........................dvaettnvqGWVCLfqithg.
1aym3      139  ttp.............................dtyssaGYITCwyqtnfv
1bbt2      122  ykv................................hkpWTLVVmvvaplt
1aym1      129  mfydgy...............dgdtyksrygtvvtndmGTLCSrivt...
1bbt1      101  tvyngecrysrnavpnlrgdlqvlaqkvartlptsfnyGAIKAt......

1bbt3      153  ....kadgdalvvlasagkdfelrlpvdarae.
1aym3      160  vppntpntaemlcfvsgckdfclrmardtdlhk
1bbt2      140  vntegapqikvyaniapt.nvhvagefpske..
1aym1      161  .seqlhkvkvvtriyhkakhtkawcprppravq
1bbt1      145  ........rvtellyrm.kraetycprpllaih

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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