1gowA_ref1 - reference 1


Name                 beta_glycosidase											

Number of sequences              4
Alignment Length                 544
Longest Sequence                 481
Shortest Sequence                450
Average Percent Identity         31
Maximum Percent Identity         45
Minimum Percent Identity         25

Sequence Name    SWISSPROT Accession
1gow                 P22498         
1pbg                 P11546         
1cbg                 P26205         
1myr                 P29092         

Family   1gow 1pbg 1cbg
Family   1myr


1gow         1  .mySFPNSFRFGWSQAGFQSEMGTpgsedpntdWYKWVHD.penmaaglv
1pbg         1  mtkTLPKDFIFGGATAAYQAEGAThtdgkgpvaWDKYLEDnywyta....
1cbg         1  nrsCFAPGFVFGTASSAFQYEGAAfedgkgpsiWDTFTHKypekik.drt
1myr         1  nssSFEADFIFGVASSAYQIEGT...igrglniWDGFTHRypdksgpdhg

1gow        49  sgdlpengpgYWGNYKTFHDNAQKMGLKIARLNSEWSRQFPNPlprpqnf
1pbg        47  ..epasd...FYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG.......
1cbg        50  ngdvaid...EYHRYKEDIGIMKDMNLDAYRFSISWPRVLPKG.......
1myr        48  ngdttcd...SFSYWQKDIDVLDELNATGYRFSIAWSRIIPRG.......

1gow        99  deskqdvteveinenelkrldeyaNKDALNHYREIFKDLKSRGL.YFIQN
1pbg        85  ....................ygevNEKGVEFYHKLFAECHKRHVEPFVT.
1cbg        90  ..................klsggvNREGINYYNNLINEVLANGMQPYVT.
1myr        88  ..................krsrgvNQKGIDYYHGLIDGLIKKGITPFVT.

1gow       148  MYHWPLPLWLhdpirvrrgdftgpsgWLSTRTVYEFARFSAYTAWKFDDL
1pbg       114  LHHFDTPEALhsn...........gdFLNRENIEHFIDYAAFCFEEFPE.
1cbg       121  LFHWDVPQALedeyr..........gFLGRNIVDDFRDYAELCFKEFGDR
1myr       119  LFHWDLPQTLqdeye..........gFLDPQIIDDFKDYADLCFEEFGDS

1gow       198  VDEYSTMNEPNVVGGLGYvgvksgfppgylsf............elsrra
1pbg       152  VNYWTTFNEIGPIGDGQYlvgk..fppg.iky..........dlakvfqs
1cbg       161  VKHWITLNEPWGVSMNAYaygt..fapgrcsdwlklnctggdsgrepyla
1myr       159  VKYWLTINQLYSVPTRGYgsal..dapgrcsptvdpscyagnsstepyiv

1gow       236  myniiq...AHARAYDGIKsvsk...kpvgiiyans...sfqpltdk...
1pbg       189  hhnmmv...SHARAVKLYKdkgyk..geigvvhalptkypydpenpa...
1cbg       209  ahyqllahaAAARLYKTKYqasqn..giigitlvsh...wfepas.keka
1myr       207  ahhqll...AHAKVVDLYRknythqggkigptmitr...wflpyndtdrh

1gow       274  dmeavemaendnrwWFFDAIIRGEITrgnekivrddlk............
1pbg       231  dvraaelediihnkFILDATYLGHYSdktmegvnhilaenggeldlrded
1cbg       253  dvdaakrgldfmlgWFMHPLTKGRYPesmrylvrkrlpk......fstee
1myr       251  siaatermkqfflgWFMGPLTNGTYPqimidtvgarlpt......fspee

1gow       312  ........GRLDWIGVNYYTRTVVKRtek........gyvslggyghg..
1pbg       281  fqaldaakDLNDFLGINYYMSDWMQAfd.........geteiikyqik..
1cbg       297  skelt...GSFDFLGLNYYSSYYAAKapripnarp.aiqtdslinatf.e
1myr       295  tnlvk...GSYDFLGLNYYFTQYAQPspnpvnatnhtammdagakltyin

1gow       344  cernsvslaglptsdfg...WEFFPEGLYDVLTKYWNRYhl..yMYVTEN
1pbg       320  gvgrrvapdyvpr.......WIIYPEGLYDQIMRVKNDYpnykkIYITEN
1cbg       342  hngkplgpmaass......wLCIYPQGIRKLLLYVKNHYnnp.vIYITEN
1myr       342  asghyigplfesdggdgssnIYYYPKGIYSVMDYFKNKYynp.lIYVTEN

1gow       389  GIADDa...........DYQRPYYLVSHVYQVHRAINS.GADVRGYLHWS
1pbg       363  GLGYKde...fvdntvyDDGRIDYVKQHLEVLSDAIAD.GANVKGYFIWS
1cbg       385  GRNEFndptlslqesllDTPRIDYYYRHLYYVLTAIGD.GVNVKGYFAWS
1myr       391  GISTPgse..nrkesmlDYTRIDYLCSHLCFLNKVIKEKDVNVKGYLAWA

1gow       427  LADNYEWASGFSMRFGLLKVDY.NTKRLYWRPSALVYREIATng
1pbg       409  LMDVFSWSNGYEKRYGLFYVDF.DTQERYPKKSAHWYKKLAEtq
1cbg       434  LFDNMEWDSGYTVRFGLVFVDFKNNLKRHPKLSAHWFKSFLKk.
1myr       439  LGDNYEFNNGFTVRFGLSYINWNNVTDRDLKKSGQWYQKFISp.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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