1idy_ref3 - reference 3


Name                 dna binding										

Number of sequences              27
Alignment Length                 64
Longest Sequence                 60
Shortest Sequence                49
Average Percent Identity         19
Maximum Percent Identity         81
Minimum Percent Identity         1

Sequence Name    SWISSPROT Accession
1idy                 P06876         
mybp_maize           P27898         
myb3_maize           P20025         
gl1_arath            P27900         
myb3_horvu           P20027         
myb2_phypa           P80073         
1hstA                P02259         
h1d_strpu            P15870         
h1b_strpu            P15869         
h1_tigca             P35060         
h1l_myttr            Q05831         
h1_echcr             P02257         
h11_caeel            P10771         
h1a_pladu            P06894         
h11_arath            P26568         
h1_dicdi             P54671         
1aoy                 P15282         
ARGR_STRCL           P95721         
G3273713             G3273713       
AHRC_BACSU           P17893         
ARGR_BACST           O31408         
ARGR_STRPN           Q54870         
ARGR_MYCTU           P94992         
1jhgA                P03032         
TRPR_HAEIN           P44889         
G3328572             G3328572       
1tc3C                P34257         

Family   1idy mybp_maize myb3_maize gl1_arath myb3_horvu myb2_phypa
Family   1hstA h1d_strpu h1b_strpu h1_tigca h1l_myttr h1_echcr h11_caeel h1a_pladu h11_arath h1_dicdi
Family   1aoy ARGR_STRCL G3273713 AHRC_BACSU ARGR_BACST ARGR_STRPN ARGR_MYCTU
Family   1jhgA TRPR_HAEIN G3328572
Family   1tc3C


1idy         1  mevkktswteeedrILYQAhkrlgnRWAEIAKLLp.........grtdna
mybp_maize   1  advkrgniskeeedIIIKLhatlgnRWSLIASHLp.........grtdne
myb3_maize   1  .dlkrgnftadeddLIVKLhsllgnKWSLIAARLp.........grtdne
gl1_arath    1  .nvnkgnfteqeedLIIRLhkllgnRWSLIAKRVp.........grtdnq
myb3_horvu   1  .dlkrgcfsqqeedHIVALhqilgnRWSQIASHLp.........grtdne
myb2_phypa   1  .dlkrgifseaeenLILDLhatlgnRWSRIAAQLp.........grtdne
1hstA        1  ...shptysemiaaAIRAEksrggsSRQSIQKYIkshykvgh...nadlq
h1d_strpu    1  ...shpkysdmiasALESLkekkgsSRQAILKYVkanftvgd...nanvh
h1b_strpu    1  ...ahpsssemvlaAITALkerggsSAQAIRKYIeknytvdi..kkqaif
h1_tigca     1  ...thpptsvmvmaAIKALkerngsSLPAIKKYIaanykvdv..vknahf
h1l_myttr    1  ....kpstlsmivaAITAMknrkgsSVQAIRKYIlannkgin.tshlgsa
h1_echcr     1  ...ahppvidmitaAIAAQkerrgsSVAKIQSYIaakyrcdi..nalnph
h11_caeel    1  ...ahppyintikeAIKQLkdrkgaSKQAILKFIsqnyklgdnviqinah
h1a_pladu    1  ...ahppvatmvvtAILGLkerkgsSMVAIKKYIaanyrvdv..arlapf
h11_arath    1  ...shptyeemikdAIVTLkertgsSQYAIQKFIeekrkelp..ptfrkl
h1_dicdi     1  ...nhptyqvmistAIAHYkdrtgsSQPAIIKYIeanynvap..dtfktq
1aoy         1  .mrssakqeelvkaFKALLkeekfsSQGEIVAALqeq.gfd...ninqsk
ARGR_STRCL   1  ........marhrrIVDILnrqpvrSQSQLAKLLadn.gls....vtqat
G3273713     1  enlnpvtrtarqalILQILdkqkvtSQVQLSELLlde.gid....itqat
AHRC_BACSU   1  .....mnkgqrhikIREIItsneieTQDELVDMLkqd.gyk....vtqat
ARGR_BACST   1  .....mnkgqrhikIREIImsndieTQDELVDRLrea.gfn....vtqat
ARGR_STRPN   1  .....mrkrdrhqlIKKMIteeklsTQKEIQDRLeah.nvc....vtqtt
ARGR_MYCTU   1  gpevaanragrqarIVAILssaqvrSQNELAALLaae.gie....vtqat
1jhgA        1  .tpderealgtrvrIIEELlrge.mSQRELKNELg..........agiat
TRPR_HAEIN   1  .taderdavglrlqIVSQLidkn.mPQREIQQNLn..........tsaat
G3328572     1  .sfserkdvasryhIIRALlege.lTQREIAEKYg..........vsiaq
1tc3C        1  ....rgsalsdterAQLDVmkllnvSLHEMSRKIs..........rsrhc

1idy        42  IKNHWNSTmrrkv.
mybp_maize  42  IKNYWNSHlsrq..
myb3_maize  41  IKNYWNTHvrrk..
gl1_arath   41  VKNYWNTHlskk..
myb3_horvu  41  IKNFWNSCikkk..
myb2_phypa  41  IKNYWNTRlkkr..
1hstA       45  IKLSIRRLlaagv.
h1d_strpu   45  IKQALKRGvtsgq.
h1b_strpu   46  IKRALITGvekgt.
h1_tigca    46  IKKALKSLvekkk.
h1l_myttr   46  MKLAFAKGlksgv.
h1_echcr    46  IRRALKNQvksga.
h11_caeel   48  HRQALKRGvtska.
h1a_pladu   46  IRKFIRKAvkqtkg
h11_arath   46  LLLNLKRLvasgk.
h1_dicdi    46  LKLALKRLvakgt.
1aoy        46  VSRMLTKFgavrt.
ARGR_STRCL  38  LSRDLDELgavki.
G3273713    46  LSRDLDELgarkv.
AHRC_BACSU  41  VSRDIKELhlvkv.
ARGR_BACST  41  VSRDIKEMqlvkv.
ARGR_STRPN  41  LSRDLREIgltkv.
ARGR_MYCTU  46  LSRDLEELgavkl.
1jhgA       39  ITRGSNSLkaapv.
TRPR_HAEIN  39  ITRGSNMIktmdp.
G3328572    39  ITRGSNALkgldp.
1tc3C       37  IRVYLKDPvsygt.

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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