1pamA_ref1 - reference 1
Name cyclodextrin
Number of sequences 5
Alignment Length 688
Longest Sequence 572
Shortest Sequence 425
Average Percent Identity 18
Maximum Percent Identity 22
Minimum Percent Identity 16
Sequence Name SWISSPROT Accession
1pamA P05618
1smd P04745
1jdc P13507
1bf2 P10342
1vjs P06278
Family 1pamA 1smd 1jdc 1bf2 1vjs
1pamA 1 .tDVIYQIFtdrfsdgnpannptgaafdgsctnlrlycggdWQGIInkin
1smd 1 grTSIVHLFew.............................rWVDIAlece
1jdc 1 gdEIILQGFhwnvvrea....................pndwYNILRqqa.
1bf2 1 ..DVIYEVHvrgfteqdts..............ipaqyrgtYYGAGlka.
1vjs 1 lnGTLMQYFewympn......................dgqhWKRLQnds.
1pamA 50 dgyLTGMGITAIwisqpveniysviny..sgvnntayhgywardfkkt..
1smd 22 r.yLAPKGFGGVqvsppnenvaih.....npfrp.wweryqpvsyklc..
1jdc 30 .atIAADGFSAIwmpvpwrdfsswsd...gsksg.ggegyfwhdfnk...
1bf2 34 .syLASLGVTAVeflpvqetqndandvvpnsdanqnywgymtenyfspdr
1vjs 28 .ayLAEHGITAVwippaykg.........tsqad...vgygaydlydlge
1pamA 96 .......npayGTMQDFKNLIDTAHAHNIKVIIDFAPNHtsp........
1smd 63 ........trsGNEDEFRNMVTRCNNVGVRIYVDAVINHmcg........
1jdc 72 .......ngryGSDAQLRQAASALGGAGVKVLYDVVPNHmnr........
1bf2 83 ryay..nkaagGPTAEFQAMVQAFHNAGIKVYMDVVYNHtae........
1vjs 65 fhqkgtvrtkyGTKGELQSAIKSLHSRDINVYGDVVINHkggadatedvt
1pamA 131 ...assddpsfaengrlydngnllggytn.........dtqnlfhhy...
1smd 97 ...navsagtsstcgsyfnpgsrdfpavp.........ysgwdfndgkck
1jdc 107 ...gypdkeinlp.........................agqgfwrndcad
1bf2 123 ...ggtwtssdpttatiyswrgl...............dnatyyelts..
1vjs 115 avevdpadrnrvisgehlikawthfhfpgrgstysdfkwhwyhfdgtdwd
1pamA 166 ....ggtdfstiengiyknlydlaDLNHNNSSVDVYLKDaikmwl.dLGV
1smd 135 tgsgdienyndatqvrdcrlsgllDLALGKDYVRSKIAEymnhli.dIGV
1jdc 129 .....pgnypndcddgdrfiggdaDLNTGHPQVYGMFRDeftnlrsqYGA
1bf2 153 .....gnqyfy.....dntgig.aNFNTYNTVAQNLIVDslaywantMGV
1vjs 165 esrklnriykf..qgkaydylmyaDIDYDHPDVAAEIKRwgtwyaneLQL
1pamA 211 DGIRVDAVkhmp...........................fgwQKSFMati
1smd 184 AGFRIDASkhmw...........................pgdIKAILdkl
1jdc 174 GGFRFDFVrgya...........................perVNSWMtds
1bf2 192 DGFRFDLAsvlgnsclngaytasapncpnggynfdaadsnvaINRILref
1vjs 213 DGFRLDAVkhik...........................fsfLRDWVnhv
1pamA 234 nnyk........pvFTFGEWflgv...........neispeyhqfanes.
1smd 207 hnlnsnwfpegskpFIYQEVidlg............gepikssdyfg...
1jdc 197 ..........adnsFCVGQLwkgpseypnwdwrntaswqqiikdwsdra.
1bf2 242 tvrpaag...gsglDLFAEPwaig............gnsyqlggfpq...
1vjs 236 rekt......gkemFTVAEYwqn..............dlgalenylnktn
1pamA 264 .gmslldfrfaqkarqvfrdnt...dnMYGLKAmlegsevdya....qvn
1smd 242 .ngrvtefkygaklgtvirkwn..gekMSYLKNwgegwgfm......psd
1jdc 236 .kcpvfdfalkermqn.........gsIADWKHglngnpd.....prwre
1bf2 274 .gwsewnglfrdslrqaqnelgsmtiyVTQDANdfsgssnlfqssgrspw
1vjs 266 fnhsvfdvplhyqfhaastqgg..gydMRKLLNstvvsk........hpl
1pamA 306 dqvTFIDNHDM..........erfht........................
1smd 283 ralVFVDNHDNqrghg..aggasilt........................
1jdc 271 vavTFVDNHDTgyspgqnggqhhwalq.......................
1bf2 323 nsiNFIDVHDGm......tlkdvyscngannsqawpygpsdggtstnysw
1vjs 306 kavTFVDNHDTqp.....gqslestvqtw.....................
1pamA 322 ..........sngdrrkleqALAFTLTS.rGVPAIYYGseqymsgg....
1smd 307 ...........fwdarlykmAVGFMLAHpyGFTRVMSSyrwpryfengkd
1jdc 298 ..............dglirqAYAYILTS.pGTPVVYWDhmydwg......
1bf2 367 dqgmsagtgaavdqrraartGMAFEMLS.aGTPLMQGGdeylr.......
1vjs 330 ................fkplAYAFILTResGYPQVFYGdmygtkgdsqre
1pamA 357 ....ndpdnrar............lpsfsttttayqvIQKLAPLRKsn..
1smd 346 vndwvgppndngvtkevtinpdttcgndwvcehrwrqIRNMVNFRNvvdg
1jdc 327 .................................ygdfIRQLIQVRRaagv
1bf2 409 ..tlqcnnnayn..ldssan.wltyswttdqsnfytfAQRLIAFRKahpa
1vjs 364 ip..............................alkhkIEPILKARKqy..
1pamA 389 ...paiaygstherwin..............ndviiyerkf....gnnVA
1smd 396 ........qpftnwydng.............snqvafgrg.......nRG
1jdc 344 r......adsaisfhsgy.............sglvatvsg.....sqqTL
1bf2 454 lrpsswysgsqltwyqpsgavadsnywnntsnyaiayaingpslgdsnSI
1vjs 382 ......aygaqhdyfdh..............hdivgwtregdssvansgl
1pamA 418 VVAINrnmntpasitglvtsLPRG.SYNDVLg.gilngn.......tLTV
1smd 418 FIVFNnd.dwtfslt.lqtgLPAG.TYCDVIsgdkingnctgi...kIYV
1jdc 370 VVALN......sdlg.npgqVASG.SFSEAV..nasngqv......rVWR
1bf2 504 YVAYNgw.sssvtft.lpap.PSGTQWYRVTdtcdwndgastfvapgSET
1vjs 412 aalitdg.pggakrm.yvgrQNAGETWHDITg.nrse.........pVVI
1pamA 459 GAGGaasnftlap...ggtavwqyttdattpiign...
1smd 462 SDDGka.hfsisnsaedpfiaihaeskl..........
1jdc 404 SGTGsg...ggep...galvsvsfrcdngatqmgdsvy
1bf2 551 LIGGagttygqcg...qsllllisk.............
1vjs 450 NSEGwg.efhvng...gsvsiyvq..............
Key
alpha helix RED
beta strand GREEN
core blocks UNDERSCORE
You can also look at the alignment in RSF format, or MSF format
with a Feature Table
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