1pfc_ref4 - reference 4


Name                 immunoglobulin PFc fragment

Number of sequences              10
Alignment Length                 378
Longest Sequence                 362
Shortest Sequence                111
Average Percent Identity         19
Maximum Percent Identity         41
Minimum Percent Identity         10

Sequence Name    SWISSPROT Accession
1pfc                 P01862         
1ige                 P01854         
1yuh                 P01726         
1mim                 P01834         
1nld                 P01864         
1frt                 P07151         
1mcp                 P01789         
1iea                 P04230         
CD11_MOUSE           P11609         
1B04_HUMAN           P30460         

Family   1pfc 1ige 1yuh 1mim 1nld 1frt 1mcp 1iea CD11_MOUSE 1B04_HUMAN


1pfc         1  ..................................................
1ige         1  ..................................................
1yuh         1  ..................................................
1mim         1  ..................................................
1nld         1  ..................................................
1frt         1  ......................aeprlplmyhlaavsdlstglpsfwatg
1mcp         1  ..................................................
1iea         1  ..................................................
CD11_MOUSE   1  .mrylpwlllwaflqvwgqseaqqknytfrclqms.sfanrswsrtdsvv
1B04_HUMAN   1  mlvmaprtvllllsaalaltetwagshsmryfdtamsrpgrgeprfisvg

1pfc         1  ..................................................
1ige         1  ..................................................
1yuh         1  .................................avvtq.esalttspget
1mim         1  ................................qivstqspaimsaspgek
1nld         1  .................................qvklq.qsgpglvqpsq
1frt        29  wlgaqqyltynnlrqe..adpcgawiwenqvswywek....ettdlkske
1mcp         1  .................................evklv.esggglvqpgg
1iea         1  ........................................gkkvitafne
CD11_MOUSE  49  wlgdlqthrwsndsat..isftkpwsqgklsnqqweklqhmfqvyrvsft
1B04_HUMAN  51  yvddtqfvrfdsdaaspreeprapwie.qegpeywdrntqifktntqtd.

1pfc         1  ..................................................
1ige         1  ...............................................nhs
1yuh        17  vtltcrsstgavttsnyanwvqekpdrlftgli........ggtnnrgpg
1mim        19  vtmtcsasss....rsymqwyqqkpgtspkrwi........ydtsklasg
1nld        17  slsitctvsgfsltcygvhwvrqspgkgle.wlgviws...ggdtdynaa
1frt        73  qlfleairtlenqin.gtftlqgllgcelapdnsslptav.falngeefm
1mcp        17  slrlscatsgftfsdfymewvrqppgkrle.wiaasrnkgnkytteysas
1iea        11  glkggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfynl
CD11_MOUSE  97  rdiqelvkmmspked.ypieiqlsagcemypgnasesflh.vafqgkyvv
1B04_HUMAN  99  reslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydgkdyi

1pfc         1  ..................................................
1ige         4  trkeekqrngtltvtstlpvgtrdwiegetyqcr.....vthphlpralm
1yuh        59  vparfsgs..ligdkaaltitgaqtedeaiyfca....lwysnhwvfggg
1mim        57  vparfsgs..gsgtsysltissmeaedaatyych......qrssytfggg
1nld        63  fisrlsitkdnsksqvffkmnslqpndraiyyca......rrggdfwgqg
1frt       121  rfnprtgnwsgewpetdivgnlwmkqpeaarkes.eflltscperllghl
1mcp        66  vkgrfivsrdtsqsilylqmnalraedtaiyycarnyygstwyfdvwgag
1iea        61  eenlrfdsdvgefravtelgrpd.aenwnsqpefleqkraevdtvcrhny
CD11_MOUSE 145  rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrgll
1B04_HUMAN 149  alnedlrswtaadtaaqitqrkweaarvaeqdra..ylegtcvewlrryl

1pfc         1  rtiskakgppri.pevyllppprnelskkkvsLTCMITGFYP.adINVEW
1ige        49  rsttktsgpraa.pevyafatpewpgsrdkrtLACLIQNFMP.edISVQW
1yuh       103  tkltvlgqpkss.psvtlfppsseeletnkatLVCTITDFYP.gvVTVDW
1mim        99  tkleikrtvaa..psvfifppsdeqlksgtasVVCLLNNFYP.reAKVQW
1nld       107  ttvtvssastta.psvyplapvsgdqtnssvtLGCLVKGYFP.epVTLTW
1frt       170  ergrqnlewkep.psmrlkarp...gnsgssvLTCAAFSFYP.peLKFRF
1mcp       116  ttvtvssesarn.ptiypltlppa.lssdpviIGCLIHDYFPsgtMNVTW
1iea       110  eifdnflvprrveptvtvyptktq.plehhnlLVCSVSDFYP.gnIEVRW
CD11_MOUSE 195  eagksdlekqek.pvawlssvps..sadghrqLVCHVSGFYP.kpVWVMW
1B04_HUMAN 197  engkdtleradp.pkthvthhp...isdheatLRCWALGFYP.aeITLTW

1pfc        49  ds..sepsd...ykntppvfdtdgsFFLYSRLKVdtdawnngesFTCSVM
1ige        97  lhnevqlpda.rhsttqprktkgsgFFVFSRLEVtraeweqkdeFICRAV
1yuh       151  kvdgtpvteg..mettqpskqsnnkYMASSYLTLsarawerhasYSCQVT
1mim       146  kv.dnalqsgnsqesvteqdskdstYSLSSTLTLskadyekhkvYACEVT
1nld       155  ns..gslssg..vhtfpavlqsd.lYTLSSSVTVtsspw.psetITCNVA
1frt       215  lr..nglasg..sgncstgpngdgsFHAWSLLEVkrgd...ehhYQCQVE
1mcp       164  gksgkdit....tvnfppalasggrYTMSNQLTLpavecpegesVKCSVQ
1iea       158  frngkeektg..ivstglvrngdwtFQTLVMLETvpqs...gevYTCQVE
CD11_MOUSE 241  mr.gdqeqqg..thrgdflpnadetWYLQATLDVeage...eagLACRVK
1B04_HUMAN 242  qrdgedqtqd..telvetrpagdrtFQKWAAVVVpsge...eqrYTCHVQ

1pfc        94  HEal.pnhviqksisrspg...............................
1ige       146  HEaaspsqtvqravsvnpgk..............................
1yuh       199  HEg....htvekslsra.................................
1mim       195  HQgl..sspvtksfnrge................................
1nld       199  HPas..stkvdkkieprgc...............................
1frt       258  HEgl..aqpltvdl....................................
1mcp       210  HDsn.pvqeldvnc....................................
1iea       203  HPsl..tdpvtvew....................................
CD11_MOUSE 285  HSsl.ggqdiilywd.arqa...pvglivfivlimlvvvgavvyyiwrrr
1B04_HUMAN 287  HEgl..pkpltlrwepssqstvpivgivaglavlavvvigavvaavmcrr

1pfc       112  ............................
1ige       166  ............................
1yuh       212  ............................
1mim       211  ............................
1nld       216  ............................
1frt       270  ............................
1mcp       223  ............................
1iea       215  ............................
CD11_MOUSE 330  sayqdir.....................
1B04_HUMAN 335  kssggkggsysqaacsdsaqgsdvslta

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE

You can also look at the alignment in RSF format, or MSF format with a Feature Table

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