AnnotSV

AnnotSV produces a tab-separated values (tsv) file which can be quickly process in a VCF file, thanks to the variantconvert program.
Both files (tsv and VCF) can be:

• easily integrated in bioinformatics pipelines
• directly open in a spreadsheet program
• quickly process and visualize in an html file, thanks to the knotAnnotSV program
• quickly process to visualize a circos plot in an html file, thanks to the vcf2circos program

The AnnotSV source code is available under the GNU GPL licence.

variantconvert

This is a powerful standalone program to convert files to VCF genomic output format.
The variantconvert source code is downloadable under the GNU Affero General Public License v3.0 on GitHub.

knotAnnotSV

This is a standalone program designed to create a customizable html file to visualize, filter and analyze an AnnotSV output.
The knotAnnotSV source code is downloadable under the GNU GPL licence on GitHub.

vcf2circos

This is a standalone program which can generate Circos plot from an AnnotSV VCF output file.
The vcf2circos source code is downloadable under the GNU Affero General Public License v3.0 on GitHub.

Annotation and ranking of your SV with AnnotSV are available online.
Results are then powered for visualization by knotAnnotSV and vcf2circos.