gscope_clonage.tcl Annotations

Procedure Detail

AfficheFournisseur

proc AfficheFournisseur { Selection }

Defined in:

gscope_clonage.tcl, line 709

AfficheLesFragmentsDeMutation

proc AfficheLesFragmentsDeMutation { Nom }

Defined in:

gscope_clonage.tcl, line 3594

AffichePeptideSortPourLesFusions

proc AffichePeptideSortPourLesFusions { {LesFiFu {}} {ChoixPourCoupure {}} {AvecAffichage {}} }

Defined in:

gscope_clonage.tcl, line 2852

AffichePof

proc AffichePof { {Quoi {}} }

Defined in:

gscope_clonage.tcl, line 1019

AfficheVirtualPPCR

proc AfficheVirtualPPCR {  }

Defined in:

gscope_clonage.tcl, line 1109

AliasPourClonage

proc AliasPourClonage { Nom }

Defined in:

gscope_clonage.tcl, line 2748

BlastNDeLOligo

proc BlastNDeLOligo { P {Banque {}} }

Defined in:

gscope_clonage.tcl, line 3308

BlastNDeLOligoPourTous

proc BlastNDeLOligoPourTous { {Banque {}} }

Defined in:

gscope_clonage.tcl, line 3270

Canonise

proc Canonise { Construction }

Defined in:

gscope_clonage.tcl, line 4452

ChercheLesOligosDoubles

proc ChercheLesOligosDoubles {  }

Defined in:

gscope_clonage.tcl, line 769

ChoixDUneListeDeSitesDeCoupure

proc ChoixDUneListeDeSitesDeCoupure {  }

Defined in:

gscope_clonage.tcl, line 1539

ChoixDUnSiteDeCoupure

proc ChoixDUnSiteDeCoupure { {ChoixPourCoupure {}} }

Defined in:

gscope_clonage.tcl, line 1590

ClonInventory

proc ClonInventory { args }

Defined in:

gscope_clonage.tcl, line 4525

ClonInventoryAppend

proc ClonInventoryAppend { args }

Defined in:

gscope_clonage.tcl, line 4503

ClonInventoryExists

proc ClonInventoryExists { args }

Defined in:

gscope_clonage.tcl, line 4494

ClonInventorySet

proc ClonInventorySet { args }

Defined in:

gscope_clonage.tcl, line 4511

ClonInventoryUnset

proc ClonInventoryUnset { args }

Defined in:

gscope_clonage.tcl, line 4519

CombineLesFragments

proc CombineLesFragments { Nom {LesBornesDesFragments {}} }

Defined in:

gscope_clonage.tcl, line 3603

CommandeOligos

proc CommandeOligos { LesFichiersOligos {NomPresumeDuFichierCommande {}} }

Defined in:

gscope_clonage.tcl, line 6245

CoOlPourTous

proc CoOlPourTous { {Action {}} }

Defined in:

gscope_clonage.tcl, line 3025

CorrigeAfterMe

proc CorrigeAfterMe {  }

Defined in:

gscope_clonage.tcl, line 57

CorrigeCmyc

proc CorrigeCmyc {  }

Defined in:

gscope_clonage.tcl, line 3

CorrigeRebuilded

proc CorrigeRebuilded {  }

Defined in:

gscope_clonage.tcl, line 35

CoupureDesADNCirculaires

proc CoupureDesADNCirculaires { {LesFichiersTFA {}} {LesSeqPos {}} {RepDestin {}} {Enzyme {}} }

Defined in:

gscope_clonage.tcl, line 1678

CoupureDesADNCirculairesPourTous

proc CoupureDesADNCirculairesPourTous {  }

Defined in:

gscope_clonage.tcl, line 1660

CoupureDUnADNCirculaire

proc CoupureDUnADNCirculaire { ADN LesSeqPos }

Defined in:

gscope_clonage.tcl, line 1730

CoupureParEnzyme

proc CoupureParEnzyme { {Qui {}} {Quoi {}} }

Defined in:

gscope_clonage.tcl, line 1559

CreateOligosForMutation

proc CreateOligosForMutation { FichierOuTexteOliMut {FicOli {}} {ReverseAussi {}} }

Defined in:

gscope_clonage.tcl, line 838

CreateOligosForSequencing

proc CreateOligosForSequencing { FichierOuTexteOliSeq {FicOli {}} {ReverseAussi {}} {SansPremier {}} }

Defined in:

gscope_clonage.tcl, line 424

CreateSeqOli

proc CreateSeqOli { Nom Debut Fin {Sens {}} {FicOli {}} }

Defined in:

gscope_clonage.tcl, line 401

CreeAdnDesProduitsPCR

proc CreeAdnDesProduitsPCR { Fichier }

Defined in:

gscope_clonage.tcl, line 6213

CreeBBC

proc CreeBBC { {NomDeLaBanque {}} {Specif {}} }

Defined in:

gscope_clonage.tcl, line 2585

CreeLaBanqueBlastClonage

proc CreeLaBanqueBlastClonage { {NomDeLaBanque {}} {Specif {}} }

Defined in:

gscope_clonage.tcl, line 2589

CreeLaBanqueBlastDesVecteurs

proc CreeLaBanqueBlastDesVecteurs { {Banque {}} {RepDestination {}} {RepVecteurs {}} }

Defined in:

gscope_clonage.tcl, line 2642

CreeLesFichiersExtension5PrimeDeRec2

proc CreeLesFichiersExtension5PrimeDeRec2 { Rec2 }

Defined in:

gscope_clonage.tcl, line 2759

CreeLeTFADesEnzymesDeRestriction

proc CreeLeTFADesEnzymesDeRestriction { Fichier }

Defined in:

gscope_clonage.tcl, line 3254

CreeToutesLesNotesPourClonage

proc CreeToutesLesNotesPourClonage { {Liste {}} }

Defined in:

gscope_clonage.tcl, line 1791

Debroussaille

proc Debroussaille { {LesRepRestants {}} }

Defined in:

gscope_clonage.tcl, line 4979

DecomposeLaLigne

proc DecomposeLaLigne { Ligne {AvecOuSansErreur {}} {Fichier {}} }

Defined in:

gscope_clonage.tcl, line 4863

DecomposeLesLignesDuFichier

proc DecomposeLesLignesDuFichier { Fichier }

Defined in:

gscope_clonage.tcl, line 4814

DecomposeLesLignesDuFichierOligos

proc DecomposeLesLignesDuFichierOligos { Fichier }

Defined in:

gscope_clonage.tcl, line 4837

DepartSequencage

proc DepartSequencage { {LesFichiersRec1 {}} {Quoi {}} }

Defined in:

gscope_clonage.tcl, line 3337

DontCreateAllOligos

proc DontCreateAllOligos {  }

Defined in:

gscope_clonage.tcl, line 1062

EstUneProtease

proc EstUneProtease { P }

Defined in:

gscope_clonage.tcl, line 1577

EstUnP

proc EstUnP { P }

Defined in:

gscope_clonage.tcl, line 4958

EstUnPABMute

proc EstUnPABMute { PAB }

Defined in:

gscope_clonage.tcl, line 798

EstUnSignal

proc EstUnSignal { Mot }

Defined in:

gscope_clonage.tcl, line 4962

FichierPpcrSansAttBAdapter

proc FichierPpcrSansAttBAdapter { Fichier }

Defined in:

gscope_clonage.tcl, line 4301

FiSeqOl

proc FiSeqOl { P }

Defined in:

gscope_clonage.tcl, line 4357

FormatageEntete

proc FormatageEntete { Entete {PourQui {}} {P {}} }

Defined in:

gscope_clonage.tcl, line 2085

Fournisseur

proc Fournisseur { P {Val {}} }

Defined in:

gscope_clonage.tcl, line 729

GenereFragments

proc GenereFragments { {Comment {}} {Fichier {}} {PAB {}} {FichierTFAs {}} }

Defined in:

gscope_clonage.tcl, line 3413

GenereOligos

proc GenereOligos { {Construction {}} {SavSapFavFap {}} }

Defined in:

gscope_clonage.tcl, line 5283

GestionDesClones

proc GestionDesClones {  }

Defined in:

gscope_clonage.tcl, line 5303

GetFromGATC

proc GetFromGATC { {SourceDir {}} {LocalDir {}} }

Defined in:

gscope_clonage.tcl, line 5744

GetMacSeq

proc GetMacSeq { {SourceDir {}} {LocalDir {}} {User {}} }

Defined in:

gscope_clonage.tcl, line 5800

GrandFrereDuMutant

proc GrandFrereDuMutant { Nom }

Defined in:

gscope_clonage.tcl, line 256

InformeSeqCheck

proc InformeSeqCheck { Selection Page }

Defined in:

gscope_clonage.tcl, line 95

InventaireDeLaDatabaseClonage

proc InventaireDeLaDatabaseClonage {  }

Defined in:

gscope_clonage.tcl, line 4395

InventaireDesFichiersClonage

proc InventaireDesFichiersClonage { {Rep {}} {OnVeut AfficherTout} }

Defined in:

gscope_clonage.tcl, line 4628

InventaireDesMatrices

proc InventaireDesMatrices {  }

Defined in:

gscope_clonage.tcl, line 1058

InventaireDesOligos

proc InventaireDesOligos { {Source {}} }

Defined in:

gscope_clonage.tcl, line 4475

InventaireDesSignaux

proc InventaireDesSignaux { {Selection {}} }

Defined in:

gscope_clonage.tcl, line 4759

InventaireDesVecteurs

proc InventaireDesVecteurs { {VecType {}} }

Defined in:

gscope_clonage.tcl, line 651

IsoleEtAfficheUnDomaineNucleique

proc IsoleEtAfficheUnDomaineNucleique { {NomOuTexte {}} {DP {}} {FP {}} }

Defined in:

gscope_clonage.tcl, line 3792

IsoleUnDomaine

proc IsoleUnDomaine { {NomOuTexte {}} {DP {}} {FP {}} {QuoiRetourner {}} }

Defined in:

gscope_clonage.tcl, line 3797

ItsOligos

proc ItsOligos { Selection {NA {}} }

Defined in:

gscope_clonage.tcl, line 4599

ItsPPCR

proc ItsPPCR { Selection {NA {}} }

Defined in:

gscope_clonage.tcl, line 4570

LaSequenceDuTFAsMultiEntete

proc LaSequenceDuTFAsMultiEntete { FichierTFAs Access }

Defined in:

gscope_clonage.tcl, line 4166

LesBornesParSeqCheck

proc LesBornesParSeqCheck { PGS }

Defined in:

gscope_clonage.tcl, line 303

LesCoupuresPossibles

proc LesCoupuresPossibles {  }

Defined in:

gscope_clonage.tcl, line 1584

LesFichiersDeType

proc LesFichiersDeType { {Type {}} {Rep {}} {GetAll {}} }

Defined in:

gscope_clonage.tcl, line 5176

LesFichiersUnAUnDuTFAs

proc LesFichiersUnAUnDuTFAs { Fichier {Rep {}} {Systeme {}} }

Defined in:

gscope_clonage.tcl, line 3769

LesLignesTrieesSurUneClefEntete

proc LesLignesTrieesSurUneClefEntete { LesLignes LesIndices }

Defined in:

gscope_clonage.tcl, line 2788

LesMutantsDe

proc LesMutantsDe { PGS {Quoi {}} }

Defined in:

gscope_clonage.tcl, line 260

LesPpcrDesPs

proc LesPpcrDesPs {  }

Defined in:

gscope_clonage.tcl, line 689

LesSujetsAvecOligos

proc LesSujetsAvecOligos {  }

Defined in:

gscope_clonage.tcl, line 3972

LesSujetsDansLeBonOrdre

proc LesSujetsDansLeBonOrdre { LesSujets }

Defined in:

gscope_clonage.tcl, line 1769

LesSujetsDeLOligo_NOT_YET_USED

proc LesSujetsDeLOligo_NOT_YET_USED { P {Action {}} {Valeur {}} }

Defined in:

gscope_clonage.tcl, line 4371

LesVecteurs

proc LesVecteurs { {VecType {}} {GetThem {}} }

Defined in:

gscope_clonage.tcl, line 628

LigneAccessPourLOligo

proc LigneAccessPourLOligo { P }

Defined in:

gscope_clonage.tcl, line 1932

MailAuxDestinataires

proc MailAuxDestinataires { FichierTXTCommandeOligos {LesDestinataires {}} {Sujet {}} }

Defined in:

gscope_clonage.tcl, line 1911

MemeAlias

proc MemeAlias { AliasDuSujet AliasDuPGS }

Defined in:

gscope_clonage.tcl, line 782

MemeOligo

proc MemeOligo { A B {Ap {}} }

Defined in:

gscope_clonage.tcl, line 4259

MutateSequence

proc MutateSequence { {PAB {}} {CodeDeMutation {}} {Extension {}} {PABMute {}} }

Defined in:

gscope_clonage.tcl, line 1366

MutateSequencesListedIn

proc MutateSequencesListedIn { FichierOuListeOuLigne }

Defined in:

gscope_clonage.tcl, line 1327

Mute

proc Mute { Code Seq }

Defined in:

gscope_clonage.tcl, line 1465

NatureDeLaSequenceAuVuDu

proc NatureDeLaSequenceAuVuDu { Titre }

Defined in:

gscope_clonage.tcl, line 136

NePasMettreAttB

proc NePasMettreAttB {  }

Defined in:

gscope_clonage.tcl, line 6581

NewVirtualPPCR

proc NewVirtualPPCR { PPCR {PGS {}} {Sujet {}} }

Defined in:

gscope_clonage.tcl, line 1195

NomDuFichierDesOligosPourMutation

proc NomDuFichierDesOligosPourMutation { FicOli }

Defined in:

gscope_clonage.tcl, line 802

NomDuFichierDesOligosPourSequencage

proc NomDuFichierDesOligosPourSequencage { FicOli }

Defined in:

gscope_clonage.tcl, line 365

NommageAuto

proc NommageAuto { Access {Systeme {}} {Rep ./} }

Defined in:

gscope_clonage.tcl, line 3748

NucExtension5PrimeDeRec2

proc NucExtension5PrimeDeRec2 { Rec2 }

Defined in:

gscope_clonage.tcl, line 2992

NumeroSuivant

proc NumeroSuivant { DernierP {Format {}} {IncrValue 1} }

Defined in:

gscope_clonage.tcl, line 2031

OldP3ofPPCR

proc OldP3ofPPCR { {PPCR {}} {Val {}} }

Defined in:

gscope_clonage.tcl, line 2329

Oli

proc Oli { {P {}} {Quoi Seq} }

Defined in:

gscope_clonage.tcl, line 4038

OlIgbmc

proc OlIgbmc { P {Val {}} }

Defined in:

gscope_clonage.tcl, line 656

OligoEnStock

proc OligoEnStock { Seq }

Defined in:

gscope_clonage.tcl, line 1304

OligosEtProduitsPCR

proc OligosEtProduitsPCR { FichierSeq SavSapFavFap args }

Defined in:

gscope_clonage.tcl, line 6590

OligosFiles

proc OligosFiles { Selection }

Defined in:

gscope_clonage.tcl, line 4552

OliVsPofOl

proc OliVsPofOl {  }

Defined in:

gscope_clonage.tcl, line 73

OrdaliDeLaSelection

proc OrdaliDeLaSelection { Page Selection {NomDuFichierOrigine {}} }

Defined in:

gscope_clonage.tcl, line 3786

P3ofPPCR

proc P3ofPPCR { {PPCR {}} {Val {}} }

Defined in:

gscope_clonage.tcl, line 2270

P5ofPPCR

proc P5ofPPCR { {PPCR {}} {Val {}} }

Defined in:

gscope_clonage.tcl, line 2211

PeptideSortPourLesFusionsPourCertains

proc PeptideSortPourLesFusionsPourCertains {  }

Defined in:

gscope_clonage.tcl, line 2816

PofMut

proc PofMut { {Oli {}} }

Defined in:

gscope_clonage.tcl, line 2446

PofOl

proc PofOl { {Oli {}} }

Defined in:

gscope_clonage.tcl, line 2520

PofPPCR

proc PofPPCR { {Quoi {}} }

Defined in:

gscope_clonage.tcl, line 2194

PofSeq

proc PofSeq { {Oli {}} }

Defined in:

gscope_clonage.tcl, line 2381

PpcrEnStock

proc PpcrEnStock { FiPpcr {Quoi {}} }

Defined in:

gscope_clonage.tcl, line 2940

Recombinaison

proc Recombinaison { FichierSiteB FichierSiteP FichierSiteL {FichierSiteR {}} {PremSec {}} }

Defined in:

gscope_clonage.tcl, line 5939

SequenceDesSignaux

proc SequenceDesSignaux { Signaux {Sens {}} }

Defined in:

gscope_clonage.tcl, line 3953

SequenceSansOligosDuVirtualPPCR

proc SequenceSansOligosDuVirtualPPCR { N }

Defined in:

gscope_clonage.tcl, line 1115

ShowBlastOfOligo

proc ShowBlastOfOligo { Selection }

Defined in:

gscope_clonage.tcl, line 755

ShowItsOligos

proc ShowItsOligos { Selection {NA {}} {GetThem {}} }

Defined in:

gscope_clonage.tcl, line 4603

ShowItsPPCR

proc ShowItsPPCR { Selection {NA {}} {GetThem {}} }

Defined in:

gscope_clonage.tcl, line 4574

ShowOli

proc ShowOli { Selection {Action {}} }

Defined in:

gscope_clonage.tcl, line 3982

ShowOligosFiles

proc ShowOligosFiles { Selection {GetThem {}} }

Defined in:

gscope_clonage.tcl, line 4556

ShowVirtualPPCR

proc ShowVirtualPPCR { Selection {Action {}} }

Defined in:

gscope_clonage.tcl, line 1067

Signal

proc Signal { {S {}} {TFAouSEQ {}} }

Defined in:

gscope_clonage.tcl, line 4225

StartOfOligos

proc StartOfOligos {  }

Defined in:

gscope_clonage.tcl, line 79

StockeCetOligo

proc StockeCetOligo { Entete Sequence {ForceProchainP {}} {FichierOli {}} }

Defined in:

gscope_clonage.tcl, line 2046

TestClonage

proc TestClonage {  }

Defined in:

gscope_clonage.tcl, line 4542

TestNewVirtualPPCR

proc TestNewVirtualPPCR {  }

Defined in:

gscope_clonage.tcl, line 1187

TestNucExtension5PrimeDeRec2

proc TestNucExtension5PrimeDeRec2 { FiRec2 }

Defined in:

gscope_clonage.tcl, line 2987

TestRecombinaisonEtFusion

proc TestRecombinaisonEtFusion {  }

Defined in:

gscope_clonage.tcl, line 5907

TfaTmpFromGCG

proc TfaTmpFromGCG { FiOl }

Defined in:

gscope_clonage.tcl, line 4350

TousLesSegmentsConsecutifs

proc TousLesSegmentsConsecutifs { Liste {JoinCar {
}} }

Defined in:

gscope_clonage.tcl, line 696

TriFragments

proc TriFragments { Page {Maniere {}} {Action {}} }

Defined in:

gscope_clonage.tcl, line 2670

TypeDeVecteurGateway

proc TypeDeVecteurGateway { Vecteur }

Defined in:

gscope_clonage.tcl, line 613

TypeDeVecteurGatewayPourTous

proc TypeDeVecteurGatewayPourTous {  }

Defined in:

gscope_clonage.tcl, line 607

UnOligoDePlusPour

proc UnOligoDePlusPour { P TFA }

Defined in:

gscope_clonage.tcl, line 4320

VerificationSequencage

proc VerificationSequencage { {LesFichiersDeSequences {}} {FichierOuBanqueCible {}} {FastaOuBlast {}} }

Defined in:

gscope_clonage.tcl, line 5579

VerificationSequencageApprofondie

proc VerificationSequencageApprofondie { FichierSequence FichierBlast {Action {}} {Maniere {}} }

Defined in:

gscope_clonage.tcl, line 174

VerificationSequencageApprofondiePourTous

proc VerificationSequencageApprofondiePourTous {  }

Defined in:

gscope_clonage.tcl, line 161

VirtualPPCREnStock

proc VirtualPPCREnStock { N {Quoi {}} }

Defined in:

gscope_clonage.tcl, line 1133

WarneReading

proc WarneReading { Texte }

Defined in:

gscope_clonage.tcl, line 4203