gscope_misynpat.tcl Annotations

Procedure Detail

AAType

proc AAType { {Qui {}} }

Defined in:

gscope_misynpat.tcl, line 1437

AccessionDuMacsimXml

proc AccessionDuMacsimXml { Name {FichierXml {}} }

Defined in:

gscope_misynpat.tcl, line 132

AjouteEntreesBiblio

proc AjouteEntreesBiblio { {db {}} }

Defined in:

gscope_misynpat.tcl, line 2458

AliFromOi

proc AliFromOi {  }

Defined in:

gscope_misynpat.tcl, line 409

AliFromOiPoch

proc AliFromOiPoch { {ListOfA {}} }

Defined in:

gscope_misynpat.tcl, line 274

BestHumanHit

proc BestHumanHit { Nom }

Defined in:

gscope_misynpat.tcl, line 1576

CompareLesSequencesPourMisynpat

proc CompareLesSequencesPourMisynpat {  }

Defined in:

gscope_misynpat.tcl, line 1529

CreateLinkInMacsimXmlMisynpat

proc CreateLinkInMacsimXmlMisynpat {  }

Defined in:

gscope_misynpat.tcl, line 958

CreateLinksToStructures

proc CreateLinksToStructures {  }

Defined in:

gscope_misynpat.tcl, line 140

CreateProjectMSP

proc CreateProjectMSP {  }

Defined in:

gscope_misynpat.tcl, line 1674

CreateProttfaDuSite

proc CreateProttfaDuSite {  }

Defined in:

gscope_misynpat.tcl, line 97

Editdb

proc Editdb {  }

Defined in:

gscope_misynpat.tcl, line 2567

EnleveDoublonsDansMisynpat

proc EnleveDoublonsDansMisynpat {  }

Defined in:

gscope_misynpat.tcl, line 50

FeaturesdesMacsims

proc FeaturesdesMacsims { Name }

Defined in:

gscope_misynpat.tcl, line 2075

FeaturesdunMacsims

proc FeaturesdunMacsims {  }

Defined in:

gscope_misynpat.tcl, line 2131

FroMac

proc FroMac { args }

Defined in:

gscope_misynpat.tcl, line 1667

FromTabSFOnDisk

proc FromTabSFOnDisk { {Qui {}} {Quoi {}} }

Defined in:

gscope_misynpat.tcl, line 444

InfoPubmed

proc InfoPubmed { Pmids {Qui {}} {Quoi {}} }

Defined in:

gscope_misynpat.tcl, line 745

InformeBestHumanHitPourTous

proc InformeBestHumanHitPourTous {  }

Defined in:

gscope_misynpat.tcl, line 1559

InformeMSP

proc InformeMSP {  }

Defined in:

gscope_misynpat.tcl, line 1634

InitDBMisynpat

proc InitDBMisynpat {  }

Defined in:

gscope_misynpat.tcl, line 2208

LesVertebrata

proc LesVertebrata { {GetWhat {}} }

Defined in:

gscope_misynpat.tcl, line 198

ListeOrgMsp

proc ListeOrgMsp {  }

Defined in:

gscope_misynpat.tcl, line 481

MakeBlastDatabaseForEachProttfa

proc MakeBlastDatabaseForEachProttfa {  }

Defined in:

gscope_misynpat.tcl, line 1515

MiseAJourDatesBiblio

proc MiseAJourDatesBiblio { {pmid {}} }

Defined in:

gscope_misynpat.tcl, line 805

MiseAJourEntreesBiblio

proc MiseAJourEntreesBiblio { {db {}} {PmidsSpecifiques {}} }

Defined in:

gscope_misynpat.tcl, line 2496

MiSynPatAddStructuralModulesToMacsims

proc MiSynPatAddStructuralModulesToMacsims { {Force {}} {Lequel {}} }

Defined in:

gscope_misynpat.tcl, line 1776

MiSynPatDir

proc MiSynPatDir {  }

Defined in:

gscope_misynpat.tcl, line 1765

MiSynPatMajDisease

proc MiSynPatMajDisease { {DoIt {}} }

Defined in:

gscope_misynpat.tcl, line 1714

MiSynPatStructuralModules

proc MiSynPatStructuralModules { {Qui {}} {Quoi {}} }

Defined in:

gscope_misynpat.tcl, line 1950

MiSynPatStructuralModulesAsFeatures

proc MiSynPatStructuralModulesAsFeatures {  }

Defined in:

gscope_misynpat.tcl, line 1930

MiSynPatStructuralModulesForDatabase

proc MiSynPatStructuralModulesForDatabase { {Qui {}} {Quoi {}} {Quid {}} {GetWhat {}} }

Defined in:

gscope_misynpat.tcl, line 1833

MitoHs

proc MitoHs { Qui }

Defined in:

gscope_misynpat.tcl, line 563

MSP

proc MSP { {Qui {}} {Quoi {}} {Quid {}} }

Defined in:

gscope_misynpat.tcl, line 1251

MspBiblioGrowth

proc MspBiblioGrowth { {GetWhat {}} }

Defined in:

gscope_misynpat.tcl, line 864

MSPFroMac

proc MSPFroMac { args }

Defined in:

gscope_misynpat.tcl, line 1659

MspModule

proc MspModule { {Qui {}} {Quoi {}} {Quid {}} }

Defined in:

gscope_misynpat.tcl, line 1829

MspRuns

proc MspRuns {  }

Defined in:

gscope_misynpat.tcl, line 922

Mut3L

proc Mut3L { A123B }

Defined in:

gscope_misynpat.tcl, line 471

NomDeMSP

proc NomDeMSP { {Qui {}} {Quoi {}} }

Defined in:

gscope_misynpat.tcl, line 1598

OuSontLesMutations

proc OuSontLesMutations { {GetWhat {}} {AllOrA {}} {Conservation {}} {Order {}} {Action {}} }

Defined in:

gscope_misynpat.tcl, line 973

PubmedField

proc PubmedField { Pmid Field }

Defined in:

gscope_misynpat.tcl, line 2307

RajouteMut3LAuTitre

proc RajouteMut3LAuTitre { Titre }

Defined in:

gscope_misynpat.tcl, line 459

ReplaceSequenceInAlignment

proc ReplaceSequenceInAlignment { FastaToInsert AccessionToRemove {OutputFile {}} }

Defined in:

gscope_misynpat.tcl, line 75

SchemaPFAM

proc SchemaPFAM {  }

Defined in:

gscope_misynpat.tcl, line 2068

SeqCalage

proc SeqCalage { Nom }

Defined in:

gscope_misynpat.tcl, line 1468

SeqCalagePourTous

proc SeqCalagePourTous {  }

Defined in:

gscope_misynpat.tcl, line 1462

SeqMac

proc SeqMac { Nom {D {}} {F {}} }

Defined in:

gscope_misynpat.tcl, line 571

SequencesDesVeryLast

proc SequencesDesVeryLast {  }

Defined in:

gscope_misynpat.tcl, line 2163

SortByStart

proc SortByStart { A B }

Defined in:

gscope_misynpat.tcl, line 1757

SortLimits

proc SortLimits { A B }

Defined in:

gscope_misynpat.tcl, line 2060

SP

proc SP { {Menage {}} {Test {}} }

Defined in:

gscope_misynpat.tcl, line 602

StructuralModuleColor

proc StructuralModuleColor { Qui }

Defined in:

gscope_misynpat.tcl, line 1796

SurveillancePubmed

proc SurveillancePubmed { {GetWhat {}} {AllFields {}} }

Defined in:

gscope_misynpat.tcl, line 2314

SynthetasesOfVertebrates

proc SynthetasesOfVertebrates {  }

Defined in:

gscope_misynpat.tcl, line 217

TabSFOnDisk

proc TabSFOnDisk { {Qui {}} {Quoi {}} {ReCreate {}} }

Defined in:

gscope_misynpat.tcl, line 153

Testcode

proc Testcode {  }

Defined in:

gscope_misynpat.tcl, line 2612

testdb

proc testdb {  }

Defined in:

gscope_misynpat.tcl, line 2579

TestMSP

proc TestMSP {  }

Defined in:

gscope_misynpat.tcl, line 1698

TLN

proc TLN {  }

Defined in:

gscope_misynpat.tcl, line 596

TriParMoisAnnee

proc TriParMoisAnnee { R1 R2 }

Defined in:

gscope_misynpat.tcl, line 856

VerifieAccession

proc VerifieAccession {  }

Defined in:

gscope_misynpat.tcl, line 9

VerifieCoherence

proc VerifieCoherence {  }

Defined in:

gscope_misynpat.tcl, line 582

VerifieLesMutations

proc VerifieLesMutations {  }

Defined in:

gscope_misynpat.tcl, line 543

VerifiePubmefInfoAFAIRE

proc VerifiePubmefInfoAFAIRE {  }

Defined in:

gscope_misynpat.tcl, line 31