gscope_olymclade.tcl Annotations

Procedure Detail

BestGeneId

proc BestGeneId { Nom }

Defined in:

gscope_olymclade.tcl, line 524

BlastOutliers

proc BlastOutliers { {UseExpect {}} {Clade {}} }

Defined in:

gscope_olymclade.tcl, line 2133

CaseRank

proc CaseRank { Valeur }

Defined in:

gscope_olymclade.tcl, line 2516

ChallengingClades

proc ChallengingClades { {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 2413

CladeChallenge

proc CladeChallenge { {Challenger {}} {Referencer {}} {Seuil {}} {GetWhat {}} {SelectMethod {}} {UseExpect {}} }

Defined in:

gscope_olymclade.tcl, line 2660

CladeCourant

proc CladeCourant { {NewValue {}} {Format {}} }

Defined in:

gscope_olymclade.tcl, line 724

CladesDistribution

proc CladesDistribution { {Method {}} {Criteria {}} }

Defined in:

gscope_olymclade.tcl, line 961

CMC

proc CMC { {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 443

DeltaDistributionForClade

proc DeltaDistributionForClade { {Clade {}} {Seuil {}} {GetWhat {}} {Method {}} {Criteria {}} }

Defined in:

gscope_olymclade.tcl, line 777

GeneIdWithGoDict

proc GeneIdWithGoDict { {Bdd {}} }

Defined in:

gscope_olymclade.tcl, line 214

GoGetShowFromGeneList

proc GoGetShowFromGeneList { LesGn }

Defined in:

gscope_olymclade.tcl, line 2358

GoGetShowFromGeneListWithNom

proc GoGetShowFromGeneListWithNom { LesNoms }

Defined in:

gscope_olymclade.tcl, line 2309

HistoDelta

proc HistoDelta { {Clade {}} {Seuil {}} {GetWhat {}} {SelectMethod {}} {UseExpect {}} }

Defined in:

gscope_olymclade.tcl, line 1476

HistoPremier

proc HistoPremier { {Clade {}} {Seuil {}} {GetWhat {}} }

Defined in:

gscope_olymclade.tcl, line 1936

HistoPremierMemo

proc HistoPremierMemo { {FichierCumulars {}} }

Defined in:

gscope_olymclade.tcl, line 1996

JoyFungi

proc JoyFungi { {FileToCreate {}} }

Defined in:

gscope_olymclade.tcl, line 53

LesBacteriesDeClaudine

proc LesBacteriesDeClaudine { {GetWhat {}} }

Defined in:

gscope_olymclade.tcl, line 4

LesHitsAvecDelta

proc LesHitsAvecDelta { Nom LesOrganismesInteressants {Seuil {}} {GetWhat {}} {SelectMethod {}} {UseExpect {}} }

Defined in:

gscope_olymclade.tcl, line 1398

LesNomsPourOlymClade

proc LesNomsPourOlymClade {  }

Defined in:

gscope_olymclade.tcl, line 2407

Medals

proc Medals { {LesTitres {}} {LeT {}} {LesHeaders {}} {LesSensDuTri {}} {TagClick {}} {NomDe {}} }

Defined in:

gscope_olymclade.tcl, line 1751

MemoCase

proc MemoCase { {Qui {}} {Quoi {}} {Valeur {}} }

Defined in:

gscope_olymclade.tcl, line 2095

MemoDelta

proc MemoDelta { {Qui {}} {Quoi {}} {Valeur {}} }

Defined in:

gscope_olymclade.tcl, line 2055

MemoDistri

proc MemoDistri { {Qui {}} {Quoi {}} {Valeur {}} }

Defined in:

gscope_olymclade.tcl, line 2114

MemoInfo

proc MemoInfo { {Qui {}} {Quoi {}} {Valeur {}} }

Defined in:

gscope_olymclade.tcl, line 2075

MemOlym

proc MemOlym { {Qui {}} {Quoi {}} {Valeur {}} }

Defined in:

gscope_olymclade.tcl, line 1378

MemoZonards

proc MemoZonards { {Qui {}} {Quoi {}} {Valeur {}} {Action {}} }

Defined in:

gscope_olymclade.tcl, line 1034

ModelOrgaGeneId

proc ModelOrgaGeneId { {Mod {}} {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 676

ModelOrgaProject

proc ModelOrgaProject { {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 634

MyGOsFromModelOrga

proc MyGOsFromModelOrga {  }

Defined in:

gscope_olymclade.tcl, line 672

NearestColor

proc NearestColor { rgb }

Defined in:

gscope_olymclade.tcl, line 1890

NIAG

proc NIAG { {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 529

NiceRank

proc NiceRank { AbsRank MaxPossible }

Defined in:

gscope_olymclade.tcl, line 1097

OiDescendants

proc OiDescendants { {Node {}} {GetWhat {}} }

Defined in:

gscope_olymclade.tcl, line 100

OlymClade

proc OlymClade { {Seuil {}} {GetWhat {}} {SelectMethod {}} {UseExpect {}} {Clades {}} }

Defined in:

gscope_olymclade.tcl, line 2544

OlymCladeHelp

proc OlymCladeHelp { {GetWhat {}} }

Defined in:

gscope_olymclade.tcl, line 1081

OlymMedals

proc OlymMedals {  }

Defined in:

gscope_olymclade.tcl, line 1688

OlymPodium

proc OlymPodium { K }

Defined in:

gscope_olymclade.tcl, line 1667

OlymStock

proc OlymStock { {Qui {}} {Quoi {}} {Valeur {}} }

Defined in:

gscope_olymclade.tcl, line 2456

OutliersFromSelection

proc OutliersFromSelection { Selection }

Defined in:

gscope_olymclade.tcl, line 2296

Paraph

proc Paraph { {Kind {}} {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 264

PhylAr

proc PhylAr { {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 147

RankSample

proc RankSample { {What {}} {Criteria {}} }

Defined in:

gscope_olymclade.tcl, line 1052

RunBlastOutliers

proc RunBlastOutliers { K {UseExpect {}} }

Defined in:

gscope_olymclade.tcl, line 1884

RunDeltaDistributionForClade

proc RunDeltaDistributionForClade { K {Method {}} }

Defined in:

gscope_olymclade.tcl, line 770

ShowDeltaDistribution

proc ShowDeltaDistribution { Selection }

Defined in:

gscope_olymclade.tcl, line 2243

ShowDeltaDistributionForClade

proc ShowDeltaDistributionForClade { {Clade {}} {Seuil {}} {GetWhat {}} {SelectMethod {}} {UseExpect {}} }

Defined in:

gscope_olymclade.tcl, line 2137

ShowDistriHits

proc ShowDistriHits { K }

Defined in:

gscope_olymclade.tcl, line 1855

ShowHitsFromTaxoBlast

proc ShowHitsFromTaxoBlast { Selection }

Defined in:

gscope_olymclade.tcl, line 2262

ShowHsapHits

proc ShowHsapHits { LesNoms {Quoi {}} {RefTaxId {}} }

Defined in:

gscope_olymclade.tcl, line 918

ShowZonards

proc ShowZonards { K NomDeDistri }

Defined in:

gscope_olymclade.tcl, line 889

SshScore

proc SshScore { {Query {}} {Subject {}} }

Defined in:

gscope_olymclade.tcl, line 256

TailleProteome

proc TailleProteome { Qui }

Defined in:

gscope_olymclade.tcl, line 2014

TaxoBla

proc TaxoBla { {Cadre {}} {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 1112

TaxoblaProject

proc TaxoblaProject { {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 217

TestCladeCourant

proc TestCladeCourant {  }

Defined in:

gscope_olymclade.tcl, line 717

TestMemoDelta

proc TestMemoDelta {  }

Defined in:

gscope_olymclade.tcl, line 2037

TestMoyenneRank

proc TestMoyenneRank {  }

Defined in:

gscope_olymclade.tcl, line 2649

TousLesPremiersDuClade

proc TousLesPremiersDuClade { Nom LesOrganismesInteressants {Seuil {}} {GetWhat {}} }

Defined in:

gscope_olymclade.tcl, line 1907

TTLL

proc TTLL { {Qui {}} {Quoi {}} }

Defined in:

gscope_olymclade.tcl, line 360