gscope_orfs.tcl Annotations

Procedure Detail

AfficheLesBlastXDesHitsMultiples

proc AfficheLesBlastXDesHitsMultiples { Nom }

Defined in:

gscope_orfs.tcl, line 156

BlastNDesTrousPourTous

proc BlastNDesTrousPourTous { {Banques {}} }

Defined in:

gscope_orfs.tcl, line 2259

BlastXDesHitsMultiples

proc BlastXDesHitsMultiples { Nom }

Defined in:

gscope_orfs.tcl, line 193

BlastXDesHitsMultiplesPourTous

proc BlastXDesHitsMultiplesPourTous {  }

Defined in:

gscope_orfs.tcl, line 185

BornesBonSens

proc BornesBonSens {  }

Defined in:

gscope_orfs.tcl, line 10

CalculeLesORFsEnOverlap

proc CalculeLesORFsEnOverlap { {AvecGLIMMER {}} }

Defined in:

gscope_orfs.tcl, line 1159

CalculeLesOverlapsDe

proc CalculeLesOverlapsDe { Moi }

Defined in:

gscope_orfs.tcl, line 1078

CalculeOverlapEntre

proc CalculeOverlapEntre { Moi et Lui }

Defined in:

gscope_orfs.tcl, line 1092

CodonStart

proc CodonStart { Nom }

Defined in:

gscope_orfs.tcl, line 1232

CommenceIci

proc CommenceIci { CommenceIci }

Defined in:

gscope_orfs.tcl, line 291

CoupeAuBonMet

proc CoupeAuBonMet { Nom PositionDuMet }

Defined in:

gscope_orfs.tcl, line 1317

CoupeAuBonMetPourTous

proc CoupeAuBonMetPourTous {  }

Defined in:

gscope_orfs.tcl, line 1366

CreeChangeCodonStart

proc CreeChangeCodonStart { Nom }

Defined in:

gscope_orfs.tcl, line 1588

CreeChangeCodonStartPourTous

proc CreeChangeCodonStartPourTous {  }

Defined in:

gscope_orfs.tcl, line 1581

CreeExtendCodonStart

proc CreeExtendCodonStart { Nom }

Defined in:

gscope_orfs.tcl, line 1533

CreeExtendCodonStartPourTous

proc CreeExtendCodonStartPourTous {  }

Defined in:

gscope_orfs.tcl, line 1526

CreeLeFichierBornesDesIntergenes

proc CreeLeFichierBornesDesIntergenes { {AskToKeep Ask} {LongueurMinimaleDesIntergenes {}} }

Defined in:

gscope_orfs.tcl, line 2401

CreeLesFichiersSequencesDesTrous

proc CreeLesFichiersSequencesDesTrous { {AskToKeep Ask} }

Defined in:

gscope_orfs.tcl, line 2304

CreeLesPABsAbInitio

proc CreeLesPABsAbInitio {  }

Defined in:

gscope_orfs.tcl, line 812

CreePAB

proc CreePAB { Trou }

Defined in:

gscope_orfs.tcl, line 2132

CreePABdesTrousCitesDans

proc CreePABdesTrousCitesDans { FOF }

Defined in:

gscope_orfs.tcl, line 2004

CreePABPourTous

proc CreePABPourTous {  }

Defined in:

gscope_orfs.tcl, line 2122

CreeStartCodonReport

proc CreeStartCodonReport {  }

Defined in:

gscope_orfs.tcl, line 576

CroqueMorts

proc CroqueMorts {  }

Defined in:

gscope_orfs.tcl, line 2228

Decede

proc Decede { Nom }

Defined in:

gscope_orfs.tcl, line 1046

DeletedStart

proc DeletedStart { Nom }

Defined in:

gscope_orfs.tcl, line 1215

Enterre

proc Enterre { Nom }

Defined in:

gscope_orfs.tcl, line 1035

EtendAuBonMet

proc EtendAuBonMet { Nom PositionDuMet }

Defined in:

gscope_orfs.tcl, line 1473

EtendAuBonMetPourTous

proc EtendAuBonMetPourTous {  }

Defined in:

gscope_orfs.tcl, line 1417

EtudeCodonStart

proc EtudeCodonStart { {CommenceIci {}} }

Defined in:

gscope_orfs.tcl, line 119

Fantome

proc Fantome { Nom }

Defined in:

gscope_orfs.tcl, line 459

Fantomise

proc Fantomise { Nom {Ordre {}} }

Defined in:

gscope_orfs.tcl, line 493

FantomisePourTous

proc FantomisePourTous { {Ordre {}} {CommenceIci {}} }

Defined in:

gscope_orfs.tcl, line 470

FrappeQuUnCoup

proc FrappeQuUnCoup { Nom Qui {Liste {}} }

Defined in:

gscope_orfs.tcl, line 259

FusionneLesBornes

proc FusionneLesBornes {  }

Defined in:

gscope_orfs.tcl, line 1297

Glimmer

proc Glimmer { {NomNumeroDuDernier {}} }

Defined in:

gscope_orfs.tcl, line 992

Glimmer2

proc Glimmer2 { {NomNumeroDuDernier {}} }

Defined in:

gscope_orfs.tcl, line 948

Glimmer3

proc Glimmer3 { {NomNumeroDuDernier {}} }

Defined in:

gscope_orfs.tcl, line 904

HitMultiple

proc HitMultiple { Nom }

Defined in:

gscope_orfs.tcl, line 301

ItsAGene

proc ItsAGene { Nom }

Defined in:

gscope_orfs.tcl, line 1065

LeMetDuPoch

proc LeMetDuPoch { Nom }

Defined in:

gscope_orfs.tcl, line 1652

LesBlastXDesHitsMultiples

proc LesBlastXDesHitsMultiples { Nom }

Defined in:

gscope_orfs.tcl, line 163

LesFantomesEnFrameshift

proc LesFantomesEnFrameshift {  }

Defined in:

gscope_orfs.tcl, line 1

LesHitsDe

proc LesHitsDe { Nom }

Defined in:

gscope_orfs.tcl, line 314

LesHitsMultiples

proc LesHitsMultiples {  }

Defined in:

gscope_orfs.tcl, line 324

LesZonesEnOverlap

proc LesZonesEnOverlap { Nom {Quoi {}} }

Defined in:

gscope_orfs.tcl, line 401

LesZonesEnOverlapMultiple

proc LesZonesEnOverlapMultiple { Nom }

Defined in:

gscope_orfs.tcl, line 356

LocaliseLeFrameshiftDuBlastX

proc LocaliseLeFrameshiftDuBlastX { Fichier }

Defined in:

gscope_orfs.tcl, line 100

LocaliseLesFrameshifts

proc LocaliseLesFrameshifts { {FichierFrameshifts {}} }

Defined in:

gscope_orfs.tcl, line 52

MetIt

proc MetIt { Nom {Raison {}} }

Defined in:

gscope_orfs.tcl, line 144

OldCreePAB

proc OldCreePAB { Trou }

Defined in:

gscope_orfs.tcl, line 2010

Overlap

proc Overlap { Nom }

Defined in:

gscope_orfs.tcl, line 1262

OverlapAtStart

proc OverlapAtStart { Nom }

Defined in:

gscope_orfs.tcl, line 1249

PossibleFrameshift

proc PossibleFrameshift { Nom }

Defined in:

gscope_orfs.tcl, line 20

RejectIt

proc RejectIt { Nom {Raison {}} }

Defined in:

gscope_orfs.tcl, line 133

RenommeLesBlastX

proc RenommeLesBlastX {  }

Defined in:

gscope_orfs.tcl, line 176

StartCodonClusterPourTous

proc StartCodonClusterPourTous { {BorneSup 250} }

Defined in:

gscope_orfs.tcl, line 772

TestCodonStartEtDeletionDuMSF

proc TestCodonStartEtDeletionDuMSF { FichierMSF {QueFaire AfficheToujours} {Nom {}} {ADN {}} }

Defined in:

gscope_orfs.tcl, line 1775

TestCodonStartEtDeletionDuMSFPourTous

proc TestCodonStartEtDeletionDuMSFPourTous { {CommenceAvec {}} }

Defined in:

gscope_orfs.tcl, line 1751

TestFrappeQuUnCoup

proc TestFrappeQuUnCoup {  }

Defined in:

gscope_orfs.tcl, line 252

TousLesMetDuPoch

proc TousLesMetDuPoch { {Nom {}} }

Defined in:

gscope_orfs.tcl, line 1632

TrousLaTotale

proc TrousLaTotale {  }

Defined in:

gscope_orfs.tcl, line 2264

VerifieLesOverlapsPlusGrandsQue

proc VerifieLesOverlapsPlusGrandsQue { {LongMini 18} }

Defined in:

gscope_orfs.tcl, line 432

YaCodonStartEnPosition

proc YaCodonStartEnPosition { Touche {sPAB {}} {NomOuADN {}} }

Defined in:

gscope_orfs.tcl, line 1719