gscope_taxo.tcl Annotations

Procedure Detail

AfficheFetchFromTaxoLine

proc AfficheFetchFromTaxoLine { Ligne {Titre {}} }

Defined in:

gscope_taxo.tcl, line 318

AfficheMsfOfFamiliarOrganisms

proc AfficheMsfOfFamiliarOrganisms { NomOrigine }

Defined in:

gscope_taxo.tcl, line 503

AfficheTaxoFromTaxoLine

proc AfficheTaxoFromTaxoLine { Ligne {Titre {}} }

Defined in:

gscope_taxo.tcl, line 308

AncetreCommun

proc AncetreCommun { A B {Quoi {}} }

Defined in:

gscope_taxo.tcl, line 647

AncetreCommunDeLaListe

proc AncetreCommunDeLaListe { Liste {Quoi {}} }

Defined in:

gscope_taxo.tcl, line 633

BetterTaxId

proc BetterTaxId { TaxId }

Defined in:

gscope_taxo.tcl, line 759

BrowseTaxNCBI

proc BrowseTaxNCBI { {Texte {}} {Quoi {}} }

Defined in:

gscope_taxo.tcl, line 1057

ChargeTaxIJNC

proc ChargeTaxIJNC {  }

Defined in:

gscope_taxo.tcl, line 1728

CondenseTaxName

proc CondenseTaxName { TN }

Defined in:

gscope_taxo.tcl, line 1641

CreateMsfOfFamiliarOrganismsForAll

proc CreateMsfOfFamiliarOrganismsForAll {  }

Defined in:

gscope_taxo.tcl, line 488

CreateSqlTaxonomy

proc CreateSqlTaxonomy {  }

Defined in:

gscope_taxo.tcl, line 455

CreateSqlTaxonomySynonym

proc CreateSqlTaxonomySynonym {  }

Defined in:

gscope_taxo.tcl, line 427

CreeTaxoblaVide

proc CreeTaxoblaVide {  }

Defined in:

gscope_taxo.tcl, line 92

CreeTaxoblaWithMyMissBlast

proc CreeTaxoblaWithMyMissBlast {  }

Defined in:

gscope_taxo.tcl, line 67

Descendant

proc Descendant { A B {ForceAncestorFirst {}} }

Defined in:

gscope_taxo.tcl, line 622

DoublonsDansTaxUniProt

proc DoublonsDansTaxUniProt {  }

Defined in:

gscope_taxo.tcl, line 1413

EstUneBacterie

proc EstUneBacterie { TaxId }

Defined in:

gscope_taxo.tcl, line 562

EstUnEucaryote

proc EstUnEucaryote { TaxId }

Defined in:

gscope_taxo.tcl, line 555

FamiliarOrganismsInMSF

proc FamiliarOrganismsInMSF { Nom }

Defined in:

gscope_taxo.tcl, line 521

HighlightClade

proc HighlightClade { Fenetre Action }

Defined in:

gscope_taxo.tcl, line 288

JeSuisDescendantDe

proc JeSuisDescendantDe { As B }

Defined in:

gscope_taxo.tcl, line 584

JeSuisTonAncetre

proc JeSuisTonAncetre { Parent Enfant }

Defined in:

gscope_taxo.tcl, line 597

LesChampsIndividuels

proc LesChampsIndividuels { Texte {Separateur ,} }

Defined in:

gscope_taxo.tcl, line 1655

LesClassesDuDescriptif

proc LesClassesDuDescriptif { Nom {Expect {}} }

Defined in:

gscope_taxo.tcl, line 414

LesOrganismesDuBlast

proc LesOrganismesDuBlast { TexteOuListeOuFichier {CutPN {}} {MaxListe {}} {GetWhat {}} {AvecMemoTaxo {}} }

Defined in:

gscope_taxo.tcl, line 127

LesTaxIdDesGenomesComplets

proc LesTaxIdDesGenomesComplets {  }

Defined in:

gscope_taxo.tcl, line 776

LoadTaxNCBI

proc LoadTaxNCBI {  }

Defined in:

gscope_taxo.tcl, line 1308

LoadTaxUniProt

proc LoadTaxUniProt { {TaxDir {}} }

Defined in:

gscope_taxo.tcl, line 1449

MsfOfFamiliarOrganisms

proc MsfOfFamiliarOrganisms { Nom }

Defined in:

gscope_taxo.tcl, line 511

NiceChildrenOf

proc NiceChildrenOf { TaxId }

Defined in:

gscope_taxo.tcl, line 58

OCduOS

proc OCduOS { OS {OS2 {}} }

Defined in:

gscope_taxo.tcl, line 1137

OsOcParTaxNCBI

proc OsOcParTaxNCBI { {Action {}} }

Defined in:

gscope_taxo.tcl, line 1128

RecupereLesVraisEmbls

proc RecupereLesVraisEmbls {  }

Defined in:

gscope_taxo.tcl, line 834

RefDuGenomeComplet

proc RefDuGenomeComplet { Banque }

Defined in:

gscope_taxo.tcl, line 731

Tax

proc Tax { Query {Quoi {}} {Valeur {}} }

Defined in:

gscope_taxo.tcl, line 343

TaxAK

proc TaxAK { TaxId {Quoi {}} {Quid {}} {Quid2 {}} }

Defined in:

gscope_taxo.tcl, line 1542

TaxC

proc TaxC { TaxIdOuTaxName {E {}} }

Defined in:

gscope_taxo.tcl, line 1688

TaxClass

proc TaxClass { Query {AllOrRankOnly {}} {Reverse {}} {Quoi {}} }

Defined in:

gscope_taxo.tcl, line 946

TaxDir

proc TaxDir { {system {}} }

Defined in:

gscope_taxo.tcl, line 1222

TaxGetz

proc TaxGetz { Query {Quoi {}} }

Defined in:

gscope_taxo.tcl, line 1012

TaxI

proc TaxI { TaxName {E {}} }

Defined in:

gscope_taxo.tcl, line 1707

TaxIdDuAccess

proc TaxIdDuAccess { Access {Nom {}} }

Defined in:

gscope_taxo.tcl, line 872

TaxIdDuFichierRef

proc TaxIdDuFichierRef { Fichier }

Defined in:

gscope_taxo.tcl, line 748

TaxIdDuGenomeComplet

proc TaxIdDuGenomeComplet { Banque }

Defined in:

gscope_taxo.tcl, line 702

TaxIdDuPAB

proc TaxIdDuPAB { Nom }

Defined in:

gscope_taxo.tcl, line 890

TaxIdDuTexteEmbl

proc TaxIdDuTexteEmbl { Embl }

Defined in:

gscope_taxo.tcl, line 856

TaxIdOfFamiliarOrganisms

proc TaxIdOfFamiliarOrganisms {  }

Defined in:

gscope_taxo.tcl, line 541

TaxN

proc TaxN { TaxId }

Defined in:

gscope_taxo.tcl, line 1676

TaxNCBI

proc TaxNCBI { TaxId {Quoi {}} {Value {}} }

Defined in:

gscope_taxo.tcl, line 1229

TaxoblaKeepOnly

proc TaxoblaKeepOnly { {KeepWhat {}} {Extension {}} {TaxoblaOrigin {}} }

Defined in:

gscope_taxo.tcl, line 15

TaxonomyDuBlast

proc TaxonomyDuBlast { TexteOuListeOuFichier {CutPN {}} {MaxListe {}} {GetWhat {}} {AvecMemoTaxo {}} }

Defined in:

gscope_taxo.tcl, line 132

TaxonomyDuBlastPourTous

proc TaxonomyDuBlastPourTous { {RepBlast {}} {RepTaxobla {}} {CutPN {}} {MaxListe {}} }

Defined in:

gscope_taxo.tcl, line 103

TaxoValide

proc TaxoValide { Liste {Quoi {}} }

Defined in:

gscope_taxo.tcl, line 569

TaxParQdsMemo

proc TaxParQdsMemo { {Qui {}} }

Defined in:

gscope_taxo.tcl, line 390

TaxSystem

proc TaxSystem { {Value {}} }

Defined in:

gscope_taxo.tcl, line 355

TaxUniProt

proc TaxUniProt { TaxId {Quoi {}} {Value {}} }

Defined in:

gscope_taxo.tcl, line 1563

TaxWithQds

proc TaxWithQds { {Valeur {}} }

Defined in:

gscope_taxo.tcl, line 332

TestNCBINames

proc TestNCBINames {  }

Defined in:

gscope_taxo.tcl, line 1382

TestSock

proc TestSock {  }

Defined in:

gscope_taxo.tcl, line 409

TestTaxClass

proc TestTaxClass {  }

Defined in:

gscope_taxo.tcl, line 925

TestTaxClassBis

proc TestTaxClassBis {  }

Defined in:

gscope_taxo.tcl, line 936

TestTaxParQdsMemo

proc TestTaxParQdsMemo {  }

Defined in:

gscope_taxo.tcl, line 382