Professional interests

My professional interests are focused on biological systems, especially the use of computational methods in human genetics and genomics:

  • Development of AnnotSV, a program designed for annotating and ranking Structural Variations
  • Expertise in variant discovery in NGS (Next Generation Sequencing) data: Whole exome/genome sequencing
  • Genetic analysis of rare human diseases: Variant & network analysis
  • Interaction with biologists and clinical geneticists

    • Employment history

  • 2022-PRESENT
    Université de Brest, INSERM, EFS, UMR 1078, GGB (Genetics, functional Genomics and Biotechnology), Brest, France
  • 2014-2022
    Laboratory of Medical Genetics, U1112, INSERM, Strasbourg, France
  • 2006-2014
    Bioinformatics Platform of Strasbourg, BIPS, Illkirch, France
  • 2002-2006
    Integrative Bioinformatics and Genomics Laboratory, LBGI, Illkirch, France

    • Qualifications

  • Master EGOISt: Etude des Génomes, Outils Informatiques et Statistiques
    (Study of genomes, informatics and statistic tools)
    2000-2002
    University of Rouen, France
  • BSc (Hons) in Biochemistry (4 years)
    1997-2000
    University of Nantes, France

    • Technical skills

  • Bioinformatics: BEDTools, GATK, IGV, BLAST, BWA, Samtools, SnpEff, Picard, VCFTools...
  • Programming languages: Python, Tcl, Perl, R, Tcsh UNIX shell script, SQL...
  • GitHub: "AnnotSV" popular repository under active development
  • Platforms: Linux, Windows
  • English: intermediate level B2
  • Proven effective and efficient organizational skills

    • Other qualifications

  • Appointed person first aid certificate
  • Fire safety assistant

    • Personal information

  • Horse riding
  • Table tennis
  • Hiking