Bird Databases List

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These database below are available in BIRD System. We could explore these data by BIRD Data Access Protocol


GENBANK DATABASES

  • GBEST : GENBANK EST
  • GBWGS  : GENBANK WGS
  • GBRL  : GENNANK RELEASE
  • GBNEW  : GENNANK NEW
  • GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW

REFSEQ DATABASES

  • REFSEQP  :REFSEQ PROTEIN
  • REFSEQG  :REFSEQ GENOMIC
  • REFSEQRNA :REFSEQ RNA
  • REFSEQNEW :REFSEQ NEW
  • REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW


UNIPROT DATABASES

  • UNIPROT  :Swiss-Prot, TrEMB
  • UNIPROT_VSP : varsplic

STRUCTURE PDB DATABASE

  • PDB: Protein Data Bank

GEO DATABASE

  • MYGEO [1](SAGE,RNA,CGH)

OTHER

  • UCSC, Alignments, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ...

ALIAS Database Names

  • PROTEIN: UNIPROT +PDB +REFSEQP
  • REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
  • GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
  • NUCLEOTIDE : =GBFULL


Format: EMBL, GENBANK, XML,GEO SOFT, CSV, OBO/OWL, PDB, UMD, Relational Schema (XML Metadata).

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