docu

Index by: file name | procedure name | procedure call | annotation

Index by file name:

gscope_affiche.tcl (annotations | original): AADuNomDuFichier; AccessDuPlusProcheDansDisphy; Affiche; AfficheAliEnPage; AfficheAliInOut; AfficheBallastDuBlastP; AfficheFetch; AfficheLesAliEnPage; AfficheLesConcernesDeCeRang; AfficheLesCouleursEtSignifications; AfficheLogDesMSF; AfficheLogDuMSF; AfficheMedline; AfficheNuc; AfficheSequencesCorrelees; AfficheTousLesMedlinesDeLaSequence; AfficheVariable; Aiguille; AiguilleLaListe; Aligne3PdeADN; AligneLesHomologuesDuBlast; AligneLesHomologuesDuBlastContreSeq; AngleDansRosace; AppendUneDemarcation; ArcLaListe; AutreCode; BindLaRosace; BoiteDuCourant; BoundingBox; BoundingBoxDuGenome; Box; ChargeADNetTDNetRAC; ChoixColoration; ClasseCanonique; CleanRosace; CocheDansLaListe; CodonStartPossible; CodonStopPossible; ColorationsPossibles; CommandesExecPossibles; CopieLesBonsDisphy; CopieLesPH; CorrigeUneExpressionDansLesInfos; CouleurDeLaBoite; CouleurDeLaZone; CouleurExquiseDeLaZone; CreeDistancesPhyloAvecLesMSFs; CreeLaTable; CreeLaTableDuTamis; CreeLeFichierAssocieAuxCouleurs; CreeLesFichiersApns; CreeLesFichiersDesShineDalgarnoDesPABs; CreeLesTables; CreeUnFichierEMBL; CurrentGenome; DemandeEtDessineOrgaEtSesPlaces; Demarcation; DemarcationDesTRNAs; DemarcationEnPosition; DemarcationEnPositionDansFichier; DemarqueLaRosace; DemarqueLeDotPlot; DernierPAB; Destroy; DetruireLaRosace; DetruireLeBoard; DetruireLeDotPlot; Dismiss; DuPlotteCourant; EnterBox; Entre0Et2PI; Entre0Et360; EntreMinEtMax; FetcheBox; FindPatternDansADNetRAC; FlecheSurArc; Gag; GereLesZoneEtiquettee; Gscope; HeureDansRosace; HeureDePosADN; InformeLesClasses; InteRosace; KanvaCourant; LaFigureAutomatique; LaFigureAutomatique2002; LaFigureAutomatiqueMsFinal; LaLigneAPnOsOc; LeaveBox; LesEntetesChevronneesDuBlast; LesOnListDeSeeAbyPossibles; LesOrganismesTresProches; LesPABsAvecInfo; LesRepertoiresInteressantsPour; LesRepertoiresPossiblesPour; LesRepertoiresPourSeeAbyShow; LesSignificationsAssocieesAuxORFs; ListeTrieeDesDistancesPhylos; Long; LongueurADN; LongueurMoyenne; ManipuleLaRosace; MemoSelection; MessAide; MiniBootstrap; MiseAJourDesEtiquettes; MiseAJourDesFichiersApns; MontreLesSD; NouveauNomDeZoneDeDemarcation; OnColorieLesFrames; OnGardeCommeNouvelOrganisme; OrganismeCanonique; OrgApprochant; OteSuperfluPourFetch; PackBo; PagePropre; PhyloRank; PhyloRankDuTamis; Plotte; PositionCanvaActuelleX; PositionCanvaActuelleY; PositionCanvaOriginaleX; PositionCanvaOriginaleY; PositionneEtInforme; PourcentageIdentiteOrga; QueFaitOn; QueryDuFichierBlast; RayonDansRosace; RechercheDansInfo; RepereBox; RestaureUneDemarcation; RosaceDeLaRosaceCourante; RosaceDesArcEnCiel; RosaceDesCas; RosaceDesGCSkew; RosaceDesPhylosFolles; RosaceDesPIOs; RosaceDesTables; RosaceDesTwoGenesCluster; RosaceDuDotPlot; SauveLaDemarcation; Scrunch; SearchInInfo; SearchOnBoard; SeeAby; SendToWeb; ShineDalgarno; ShowBlastFromSelection; ShowBox; ShowBoxAction; ShowNote; ShowNucRosace; SwitchEnX; TestDecortiqueBlast; TestLong; TestQuidSeq; TextePourRosace; TourneLaListeAutour; TousLesMiniBootstrap; TousToTFA; TPIO; TrieLesListesDeDemarcation; TrouveLaReferenceVoulue; UT; Vitrine
gscope_aful.tcl (annotations | original): ChargeLeMeilleurAful; ChargeLesDonneesAful; DonneesAful; GNdeAful; MeilleurAful; NomDuMeilleurAful; QueDitAful
gscope_aligne.tcl (annotations | original): AfficheLeNombreDeResidusDansLesDomaines; Alignons; AnchorsCoherents; ConcatAlignments; ConserveLesDomaines; ConvertToOneHundred; ConvertToOneHundredPourTous; CorrectionPourVarsplicDuBlastP; CorrectionPourVarsplicDuBlastPPourTous; CreeLaListeLesCopains; CreeLeMSFduTFAs; CreeLeTFAsDuMSF; DansAlignementPositionAbsolue; DansAlignementPositionAutreDe; DansAlignementPositionRelative; DbClustal; DbClustalEtMacsims; DbClustalPourTous; DecortiqueUnMSF; EquivalentDansMSF; EstUnFragment; ExecuteMacsim; FichierAnchorsPour; FromDbClustalToLeon; LectureSegAli; LeNombreDeResidusDansLeDomaine; LeonEtMacsimPourTous; LesAccessDuAliInOut; LesAccessDuMSF; LesCandidatsPourClustalW; LesDescriptifsDuBlast; LesGrosManquants; LesOrganismesImportantsPourDBClustal; MacsimExiste; MAFFT; MAFFTPourTous; MsfLeon; OnAligneTousLesElusDuBlastPPar; OnVireLesMonstresLointains; PositionAbsolueDansAlignement; PositionAutreDe; PositionDansMSF; PositionRelativeDansAlignement; RacineDuPDB; RapportAliInOut; Rascal; RascalPourTous; ReordonneLeFichierMSF; ReordonneMSF; RunDbClustal; TailleDesSequencesAAligner; TailleDuDescriptifDuBlastP; TailleSortiePourDBClustal; Tdbc; TestAnchorsCoherents; TestCreeLaListeLesCopains; TestDecortiqueUnMSF; TestGscopeCroises; TFAsDuBlast; UneSequenceDuMSF
gscope_aliweb.tcl (annotations | original): BelleGauche; CouleurOrdali; FromDumpOrdaliToCanvasOrHtml; HtmlOrdali; MsfToHtml; PrintOrdali; Tagoff; Tagon; TextOnCanva; TextOnHTML
gscope_atelier.tcl (annotations | original): AccessDuMiRNA; AccessDuMiRNAPourTous; AcGnDeDesAccess; AddAliasPourMiRNA; AddBranch; AddLeaf; AddPV; AddToBioTclSources; AddUser; AddUsers; AdressesIsabelle; AfficheCorrelationClustersOperons; AfficheLesProfileSegments; AfficheLesSourcesDeGscope; AfficheOperonsCommunsAuxClusters; AfficheProfileSegment; AfficheToutesLesDefinitions; AliCartoon; AngleDeHeure; AngleDesTemps; AppendPierre; ArbreDesClasses; ArgumentListWithDefault; ArtiChro; AutoPathes; AutreAccessDansGM; AutreAccessDansXref; BashFromTcsh; BBSAnnotLaTotale; BBSCreateAccessMRnaPourTous; BBSCreateOrthologs; BBSDeOlivier; BeauDessin; BelleBanque; BellesCouleurs; BlastPPourTousDuFichier; BlastXmotifsFromRNA16S; BLAT_clientPourTousRR; BonAccessPourToday; BonAliPourToday; BornesLocales; BornesLocalesRaymond; Branches; C28; CafeDeCafe; CanvasToSvgFile; Cartoon; CatalogLinks; CGDelarue; ChangeBlastOutputFormat; ChangePrintToToBrowserInPythonFile; ChangeValueTree; CheminsAgentAARR; CheminsAgentRR; ChromosomeLocation; ChroSeq; CilioBlastSummaryRR; CioNarcisse; CleanBiolo; CleanEcoliCDS; CleanRadarGenerator; ClosPierre; CodeFromSeq; ColCol; CompareChroDebutFin; CompareLesFortran; CompareLesProcs; CompareSources; Compress; ComptageMotifsExons; CompteGenoret; ContactRna16SWithMrna; ConvertAllGCG; CopieBiolo; CopieEnteteDuNuctfaVersProttfa; CopieEnteteDuNuctfaVersProttfaPourTous; CorrectEOE; CorrelationClustersOperons; CorrigeCAPweb; CorrigeLesNumeros; CreateASM; CreateBlastDatabaseVertebrata2015; CreateBlastDatabaseVertebrataOI2017; CreateCDSGscopeProjectFromGenbank; CreateChrGscopeProjectFromGenbank; CreateChromosomeGenbanksFromGenbank; CreateChromosomeLocation; CreateESBS2015; CreateESBS2016; CreateGscopeDatabaseForCDSProtFoF; CreateGscopeProjectFromGenbank; CreateImAnnoGenes; CreateMotifMappingLevure; CreateNode; CreateSAGE2016; CreateSAGE2017; CreateUserDir; CreeBornesdesarnsPourMmusCDS; CreeBornesdespabPourMmusCDS; CreeBornesdespabPourMmusCDS_Old; CreeBornesDesPABsDuFichierSubset; CreeBornesdestrnasPourMmusCDS; CreeLeFichierTFAsDesRNsDeCbriggsae; CropLesAlignements; Curl; CutBranch; DataSet; DecortiqueDisEmbl; DecortiqueProfileSegments; DecoupeBlast; DefinitionPartagee; DeFromUniprotData; Degrave; DeMG; DescriptionDesAccess; DomainesDuFastaCM; Dpkg; DpkgShow; DST; EFFamily; EssaiTcl; EvolAcc; EvolAccEtUniprot; EvolHHuProDir; EvolSeq; EvolSeqFI; EvolSeqFT; EvolSeqIT; EvolSeqUT; ExisteAussiDansZCB; ExtractFromRefseq; ExtractFromRefseqPourTous; FichierTFAsNonRedondant; FilsDeRR; FilsDeRROLD; FindNode; FindOligosForSerena; FinsFlo; Flo; Fourmis; FreewrapGscope; FromChro; FromInterproWeb; g; GardePierre; GenemapKey; GenenameDesAccess; GeneQuid; GenesFromOmimHitsFromFile; GetPicture; GnFromUniprotData; GPG; GQ; Graphiste; Grave; HasBranches; HasXMotif; HasXMotif16S; HeightOfTree; hihi; HistoJulie; HomeLinksPlanbis; HumanMutationDisease; IdAcGn; IdAcGnCreateFile; IdAcGnForList; IlpTree; ImAnnoImage; ImAnnoTissueTree; Imap; InformeEFFamily; InsereGenomicsLink; IsLeaf; JavOO; Json; KinaseBarcode; LesAccessFreresDansDecrypthon; LesCsDeManu; LesFastas; LesIdMappingUniprot; LesIlotsSansPointDans; LesInfosDuPoch; LesLongueursDesSequences; LesMotsImportants; LesOrganismesDuHTML; LesOXDuFasta; LesPDBPourBali3; LesProceduresDuFichier; LesProcsEnDouble; LesProjetsDe; LesRecepteursNucleairesDe; LesRNsDeYann; LesSourcesDeGscope; LesSourcesDuProgramme; LesTaxIdDeOdile; LesUtilesDeHumanGenome; LesVieuxLiens; LisBox; ListOfGenesWith; LitPG94; lmPDBSearch; LoadTxlForMonika; LocaliseSurADN; LongueurDeLaSequence; LOPPI; MapAreaFromCanva; MeilleureFrame; MemeSequence; Memory; MenageDansGenomicsLink; MenageGenomicsManu; MenageGstock; Mesures; MiseAJourDesNomsDeVariables; MiseAJourGPG; MiseAJourGPGOLD; MobyleBlastDatabase; MobyleConfig; MomentUnique; MontageDesCrop; MontageDesSmall; MorbidMap; MorbidMapFromList; MorceauxChoisis; MorceauxChoisisAndMore; MultiPro; MultiWordToTitle; NewLeaf; NewTree; NewTreeFromTrees; NewUser; NicePrintOfTree; NucProteomeDir; OmimGenemap; OmimGenemapFromList; OmimHitsFromFile; OOOOOOOOOOCreateMotifMappingLevure; Ordonateur; ORFsDesOperonsCommuns; OrfWithStop; OrgPourCiona; Oue; OuSontLesProcedures; OverlapTU; PA; PABDevantEnAccess; ParcoursFractal; ParcoursFractalGraphe; Passeur; PathToNode; PhylogenicBarcode; PochAliDir; PochAliLaTotale; PochDegap; PourChristopheRomier; PourGPG; PP; PrettyDict; ProcDeGscopeEnDouble; ProcDuFichier; ProcPourBioTcl; ProfileSegment; ProgsToBiolo; Proprio; PU; Py; Pythonerie; QuiContient; QuiEstGros; RajoutChr; RajoutEnFinDesLignesDuFichier; Random; RangeGstock; ReadFile; RecuperePU; RemoveLesLiensModellerDansPython; RemplaceCloCloExists; RemplacePartout; RemplaceSetCloClo; RenommeAlphabetic; RenommeFichiers; RenommeInterRatio; RenommeLesCopiesDEcrans; RenommeLesPhotos; ReOuvrePierre; RepOk; ResizeEtMontageDesCrops; RRRRRCanvasDuBlastToSvg; RsyncGstock; SansNarcisse; SeqDuEmbl; SeqFromCode; SetcomToModule; SetupGscope; ShowImage; ShowIp; SimpleFasta; SM2PHKB; Sm2PhPhenotype; SnifAli; SontCeLesMemes; Sophie; SourceAutonome; Spy; StatsDelarue; StopDuMs; SubstitueHtml; SupprimeVide; SwapRoot; TarDeGscope; TB; TcpDump; TestCanvasToSvgFile; TestCanvasToSvgFileSvg; TestCenar; TestCheminRR; TestDataSet; TestDefinitionPartagee; TestDict2Json; TesteGrave; TesteUnCanva; testExec; TestHttpCopy; TestOnto; TestOr; TestOXOC; TestRavi; TestSocket; TestTDomSurSpineAnnotation; TestTDomSurSpineTarget; TestTree; TestTri; TestWali; Tete; TexteUT; TfaAvecOrgaEnAccess; TL; ToutPourYann; TreeFromArbre; TriBulle; TriCollectif; TriCotte; TriDiag; TriDico; TriDiviseEtInterclasse; TrieLesTimesDesDevStage; TrieLesTissuesDesSelectedEST; TriHKL; TriPosePetit; TriStep; TriTete; Trrr; TT; TTime; TU; TUT; Utf8; ValueOfTree; VariantSCR3; VerifFungi; VerifieExtractRefseqOldAndNew; VerifieInfos; VerifieLesPPCR; VerifieNucProt; VerifInterproData; VerifMiRNAdeMarianna; VersionSurBiolo; VraiChemin; VraimentEgares; WithXColumn; XMotifInRna; Xmotifs16SInOverlap; XMotifsInOverlap; Ya; Yann
gscope_balibase.tcl (annotations | original): BalibaseFile; BaList; CreeBalibaseBornesDesPABsAvecRV; CreeLesLiensDansBalibase; JulieDefinition; JulieDefinitionPourTous; RameneBalibase; RangeBalibase; RepertoireBalibase; RewriteXmlToXml; RewriteXmlToXmlPourTous; RVof; TestRewriteXmlToXml; XmlValidePourTous
gscope_basic.tcl (annotations | original): DecrValFromStack; DestroyStack; IsEmptyStack; PullFromStack; PushOnStack; TestStack; ValFromStack
gscope_batchcom.tcl (annotations | original)
gscope_bigbang.tcl (annotations | original): ACetDRdansTREMBL; AnalyseLesDbClustal; AnalyseLesTBlastN; Ballast; BallastUnBlastP; BallastUnPAB; BlastNPourTous; BlastParameters; BlastPPourTous; BlastXDesTROUsPourTous; BlastXPourTous; BootstrapPourTous; BornesDuPABDUnAutreGenome; ChangeGenome; ChargeConfig; ChargeMiniConfig; CompleteLaDataBase; CreateurDesPABs; CreeADNetTDNetRACaPartirDuFichierTFA; CreeCompletTFAavecADN; CreeFichierMiniConfig; CreeLaBase; CreeLaBaseOuLaCollection; CreeLaCollection; CreeLeFichierBornesDesPABs; CreeLesFichiersNucTFAetNucEMBLAvecBornesDesTRNAsEtADN; CreeLesFichiersNucTFAetProtTFAetNucEMBLetProtEMBL; CreeLesFichiersNucTFAetProtTFAetNucEMBLetProtEMBLAvecBornesDesPABsEtADN; DedicatedBlastDatabase; FinPasTouche; FormatDesNumerosPourCollectionDuGenome; FormatDesNumerosPourCollectionDuProjet; GenomeDu; LesNomsGscopeDeLOrganisme; LocaliseBlastNDataBase; LocaliseBlastPDataBase; LocalisePsiBlastPDataBase; LocaliseTBlastNDataBase; MonImageDansLaBanque; Narcisse; NarcisseDuFichier; NiveauParFamille; NomDeFamille; NotreOC; NotreOS; NotreOX; NotreTaxId; OrganismeDuGenome; OuSuisJe; PasTouche; PrefixeDuGenome; PrefixeDuProjet; PsiBlastPPourTous; ReadLink; RenommePABenABY; RepriseDeOldBsuX; RepriseDeVieuxPABs; StopAllGscope; TBlastNPourTous; TBlastXPourTous; TestPasTouche; TRNAscanSE; WhichBanqueTBlastN
gscope_bird.tcl (annotations | original): Bird; BirdEntry; BirdEstDisponible; BirdFastaOldDeRaymond; BirdFromQueryFile; BirdFromQueryText; BirdFromTheBlast; BirdGet; BirdGetFields; BirdGscopeKeywords; BirdGscopeQueries; BirdGscopeSearch; BirdKeywords; BirdMetadata; BirdPostFileAndGetFromUrl; BirdQL; BirdSendQueryAndGetFromUrl; BirdSendQueryUrlAndGetFromUrl; BirdShowTable; BirdStar4FromQueryFile; BirdUrl; BirdWeb; BirdWebFromTFAs; DbFetchForMacsim; LesDefinitionsDuMsf; NPduNM; TestBird; TestBirdFromQueryText; TestBirdFromTheBlast; TestBirdQL; TestPost
gscope_blastomics.tcl (annotations | original): AliIndel; AliStat; AliStatPourTous; bbsc; BlastAli; BlastAliComprime; BlastAliStatPourTous; BlastIndel; BlastomicsClades; BlastomicsCladesClaudineNeSertPlus; BlastomicsCreateDb; BlastomicsCreateIndex; BlastomicsDbDir; BlastomicsDir; BlastomicsFilterTaxobla; BlastomicsNewQuery; BlastStat; CanalSqlTaxobla; CarEx; CarExVerif; CdsFromDec2016; CdsFromRefseq; CladeContentWithinOi2017; CreateMacsimXmlNuc; CreateMsfAndMacsimFromTfaPourTous; CreateNucAliFromProtAliBBSC; CreateNucAliFromProtAliBBSCPourTous; CreateProjectBBSC; DGB; FromBlastIndel; InformeBBSCPourTous; LesOsDesAcDeClaudine; MrnaDesCopainsPourTous; MrnaFromPourTous; MrnasFrom; NicoMapping; OrganiseLesToposDeClaudine; TBA; TestBlastomicsSql
gscope_blome.tcl (annotations | original): BlomeClades; BlomeCreateDb; BlomeCreateIndex; BlomeDbDir; BlomeDir; BlomeFilterTaxobla; BlomeNewQuery; CanalSqlTaxobla
gscope_canalsql.tcl (annotations | original): CanalSqlCilioCarta; CanalSqlCstb; CanalSqlDbgs; CanalSqlDomine; CanalSqlEncode; CanalSqlFedlord; CanalSqlGecoDB; CanalSqlGeneOntology; CanalSqlGenoret; CanalSqlGx; CanalSqlGxDb; CanalSqlGxDbCil; CanalSqlInteraction; CanalSqlMacsims; CanalSqlMiSynPat; CanalSqlOrthoInspector; CanalSqlPampas; CanalSqlPatternDB; CanalSqlPatternDB18; CanalSqlPatternDB19; CanalSqlPuzz; CanalSqlRetinoBase; CanalSqlSanger; CanalSqlSanger18; CanalSqlSanger19; CanalSqlString; CanalSqlUcsc; CanalSqlUcscDog; CanalSqlUcscDroso; CanalSqlUcscHuman; CanalSqlUcscHuman18; CanalSqlUcscHuman19; CanalSqlUcscMouse; CanalSqlUcscRat; CanalSqlUcscWorm; ConnInfo; ConnInfoBioArrayBase; ConnInfoCilioCarta; ConnInfoCstb; ConnInfoDbgs; ConnInfoDomine; ConnInfoEncode; ConnInfoFedlord; ConnInfoForDatabase; ConnInfoGecoDB; ConnInfoGeneOntology; ConnInfoGenoret; ConnInfoGoMiner; ConnInfoGx; ConnInfoGxDb; ConnInfoGxDbCil; ConnInfoInteraction; ConnInfoMacsims; ConnInfoMiSynPat; ConnInfoOrthoInspector; ConnInfoPatternDB; ConnInfoPatternDB18; ConnInfoPatternDB19; ConnInfoPuzz; ConnInfoRetinoBase; ConnInfoSanger; ConnInfoSanger18; ConnInfoSanger19; ConnInfoString; ConnInfoSysCilia; ConnInfoUcsc; ConnInfoUcscDog; ConnInfoUcscDroso; ConnInfoUcscHuman; ConnInfoUcscMouse; ConnInfoUcscRat; ConnInfoUcscWorm; TestSqlCilioCarta
gscope_ccClementine.tcl (annotations | original): CalculSumOfPairs; PositionsLocalesVersGlobales; RatioXMotifs; RatioXMotifsPourTousOrganismes; StatistiquesXMotifs; SumOfPairsCL
gscope_cilio.tcl (annotations | original): AamForCilioPathyGenes; BilanCilio; BilanCilio2014; BilanCilioQds; BonneEntetePourBilanCilio; CilioCartaDb; CilioCartaDir; CilioCartaProject; CilioCartaVersion; CilioDesc; CilioMapping; CilioPathyGenes; CilioPathyGenesOLD; CilioPep; CladeContent; CompareOrganismFromOrthoInspectorAndYannis; CompareOrganismsOiYannis; CorrigeLesDescriptifs; CorrigeLesDescriptifsEnSupprimantRootEtCellularOrganism; CreatePdbFromSeqResAndProtName; CreeBlastDatabasesWithOrthoinspectorProteomes; CreeProjetGscopeCilioCarta; CreeUneBanqueBlastAvecOrthoInspector; CreeUneBanqueBlastAvecYannis; CreeUneBanqueBlastPAL; FastaForBlast; FromOrthoInspector; FromYannis; InformeCilioCarta; InformeIdOiAndAcOiPourTous; InformeIdRefAndAcRefPourTous; InformeIdYaAndAcYaPourTous; InformeIdYaRefAndAcYaRefPourTous; InformeParProtemblPourTous; InventOi; MajOiProteomes; MajYaProteomes; OiLesTFAsDesOrthologs; OiName; OiOrgaList; OiOrganism; OiOrthologsFromCilioCarta; OrganismFromOrthoInspector; OrganismFromYannis; OrganismListForCilioCode; PABsDuIdOuAc; PdbInfo; PdbSeqRes; RajouteCrEnFinDeFasta; RajouteEnFinDeEnteteFasta; RajouteOXDansBanqueOrthoinspector; RajouteOXDansEnteteFasta; SelectClade; StatFromFasta; TailleDeLaBanque; UniprotHistory; VerifieLeFasta; YannisOrganism
gscope_circo.tcl (annotations | original): A2M; AddFeatures; AddMRna; AllAboutCif; AllAboutMoreFrequentCodons; AllAboutMoreFrequentCodonsJoy; AllAboutMoreFrequentCodonsMGS; AllCodons; AllCodonsOrdered; AllCoMa; AllInMotif; AllInMotifFile; BadCodon; BestSilva; BlastColiDomains; C216; CalculSumOfPairsForCodonsAndCodonMatrix; ChromoCount; Cif; CircoData; CirCode; CirCodeFor; CirCodeInfo; CirCodeProt; CircoDir; CodonMatrix; CodonMatrixFile; CodonMatrixFileHuman; CodonMatrixNotModified; CodonMatrixRaymond; CoFreq; CoFreqPourTous; CoFreqPourTousPourRandom; ColiDomain; ColumnsOfCodonsInXMotifs; ColumnsOfCodonsInXMotifsPourTous; CompareMDScore; CompareX; CompleteMAMAsProject; CompleteMAMAsStatistics; CompleteMAMAsStatisticsForAll; CountXMotifs; CountXMotifsForAll; CreateAccessMRnaPourTous; CreateAllImagesFor; CreateAllImagesForAllPdfTypes; CreateColiSeqs; CreateMacsimsWithMotifsX; CreateMacsimsWithMotifsXForAll; CreateMAMAsProject; CreateNucAliFromProtAli; CreateNucAliFromProtAliMGS; CreateNucAliFromProtAliMGSPourTous; CreateNucAliFromProtAliPourTous; CreateNucAliTfa; CreateNucAndProtTfaAndMsfFromNucAliTfa; CreateNucAndProtTfaAndMsfFromNucAliTfaPourTous; CreateProtAliTfaFromNucAliTfaForJoy; CreateProtAliTfaFromNucAliTfaForJoyPourTous; CreeBanqueBlastFromSilva; CreeCirCode; DecortiqueBlastRnaDomain; DiBase; ExtractFromExonNuc; FastaFromBestSilva; FichesGraphDir; FreCo; FromCif; FromRnaAli; HideRandomData; HtmlForAllCodonMatrix; InformeChromoLocPourTous; InformeColumnsOfCodonsInXMotifs; InformeEHomsaReferencePourTous; InformeNbXMotifsPourTous; IsX0; JoinedRnaMotifsFor; Karim; li; LongueurTotale; MacsimRsfDir; MacsimXmlDir; MAMAsOrg; MAMAsSeq; MGSAccessMrna; MGSConvertToRsfAndMacsimPourTous; MGSConvertToRsfAndMacsimPourTousAllRandoms; MGSCreateAllNuctfa; MGSCreateAllNuctfaForEachOrganism; MGSCreateDatabase; MGSLaTotale; MGSMrna; MoreFrequentCodons; MoreFrequentCodonsPourJoy; MoreFrequentCodonsPourMGS; MoreFrequentCodonsPourTous; MRna; MsfOnOneLine; MutateNucAliTfa; OLD_SPCandCMforReference; OnChro; OverlapRna; Pml; PmlFromColiTo; PossibleFichesGraphPdfTypes; PossiblesOrganismsInStartFile; PrintBothCodonMatrix; PrintCodonMatrix; RandomCodonMatrix; ReferenceOrg; RemoveEmptyPiliers; RenameMAMA; RepSil; RepSilva; ReRunConvertWithClustalw; ReRunConvertWithClustalwPourTous; RiboNomme; RiboRec; Rna16SC216; RnaMotif; SeeRnaMotifs; SeeSeqs; ShowXMotifs; SPCandCMforReference; StatisticsForCodons; Sum; SumOfPairsDir; SumOfPairsForCodonsAndCodonMatrix; SumOfPairsForCodonsDir; SumOfPairsForCodonsHumanDir; SupprimeDoublonsDansTFAs; TestAllFreCo; TestC216; TestCC1; TestCC2; TestCC3; TestCirCode; TestCM; TestCodonMatrix; TestColi; TestFreCo; TestRandomCodonMatrix; TunnelThermus; WantedOrganism; WantedOrganisms; X0; X0MotifsFeaturesDir; X1MotifsFeaturesDir; X2MotifsFeaturesDir; XCodons; XMotifs; YCodeFor
gscope_clonage.tcl (annotations | original): AfficheFournisseur; AfficheLesFragmentsDeMutation; AffichePeptideSortPourLesFusions; AffichePof; AfficheVirtualPPCR; AliasPourClonage; BlastNDeLOligo; BlastNDeLOligoPourTous; Canonise; ChercheLesOligosDoubles; ChoixDUneListeDeSitesDeCoupure; ChoixDUnSiteDeCoupure; ClonInventory; ClonInventoryAppend; ClonInventoryExists; ClonInventorySet; ClonInventoryUnset; CombineLesFragments; CommandeOligos; CoOlPourTous; CorrigeAfterMe; CorrigeCmyc; CorrigeRebuilded; CoupureDesADNCirculaires; CoupureDesADNCirculairesPourTous; CoupureDUnADNCirculaire; CoupureParEnzyme; CreateOligosForMutation; CreateOligosForSequencing; CreateSeqOli; CreeAdnDesProduitsPCR; CreeBBC; CreeLaBanqueBlastClonage; CreeLaBanqueBlastDesVecteurs; CreeLesFichiersExtension5PrimeDeRec2; CreeLeTFADesEnzymesDeRestriction; CreeToutesLesNotesPourClonage; Debroussaille; DecomposeLaLigne; DecomposeLesLignesDuFichier; DecomposeLesLignesDuFichierOligos; DepartSequencage; DontCreateAllOligos; EstUneProtease; EstUnP; EstUnPABMute; EstUnSignal; FichierPpcrSansAttBAdapter; FiSeqOl; FormatageEntete; Fournisseur; GenereFragments; GenereOligos; GestionDesClones; GetFromGATC; GetMacSeq; GrandFrereDuMutant; InformeSeqCheck; InventaireDeLaDatabaseClonage; InventaireDesFichiersClonage; InventaireDesMatrices; InventaireDesOligos; InventaireDesSignaux; InventaireDesVecteurs; IsoleEtAfficheUnDomaineNucleique; IsoleUnDomaine; ItsOligos; ItsPPCR; LaSequenceDuTFAsMultiEntete; LesBornesParSeqCheck; LesCoupuresPossibles; LesFichiersDeType; LesFichiersUnAUnDuTFAs; LesLignesTrieesSurUneClefEntete; LesMutantsDe; LesPpcrDesPs; LesSujetsAvecOligos; LesSujetsDansLeBonOrdre; LesSujetsDeLOligo_NOT_YET_USED; LesVecteurs; LigneAccessPourLOligo; MailAuxDestinataires; MemeAlias; MemeOligo; MutateSequence; MutateSequencesListedIn; Mute; NatureDeLaSequenceAuVuDu; NePasMettreAttB; NewVirtualPPCR; NomDuFichierDesOligosPourMutation; NomDuFichierDesOligosPourSequencage; NommageAuto; NucExtension5PrimeDeRec2; NumeroSuivant; OldP3ofPPCR; Oli; OlIgbmc; OligoEnStock; OligosEtProduitsPCR; OligosFiles; OliVsPofOl; OrdaliDeLaSelection; P3ofPPCR; P5ofPPCR; PeptideSortPourLesFusionsPourCertains; PofMut; PofOl; PofPPCR; PofSeq; PpcrEnStock; Recombinaison; SequenceDesSignaux; SequenceSansOligosDuVirtualPPCR; ShowBlastOfOligo; ShowItsOligos; ShowItsPPCR; ShowOli; ShowOligosFiles; ShowVirtualPPCR; Signal; StartOfOligos; StockeCetOligo; TestClonage; TestNewVirtualPPCR; TestNucExtension5PrimeDeRec2; TestRecombinaisonEtFusion; TfaTmpFromGCG; TousLesSegmentsConsecutifs; TriFragments; TypeDeVecteurGateway; TypeDeVecteurGatewayPourTous; UnOligoDePlusPour; VerificationSequencage; VerificationSequencageApprofondie; VerificationSequencageApprofondiePourTous; VirtualPPCREnStock; WarneReading
gscope_closig.tcl (annotations | original): AfficheLesRec1; AfficheLesRec2; AfficheRec1; AfficheRec2; AfficheZoneContigue; AliasAlias; AliasManquants; AllAboutVE; BrocOli; CaCommenceParAttB; ChargeCloDoE; ChoisisFichierSignauxEtSignaux; ChoisisLesSignauxDansLeFichier; CodeMutation; CorrectionPourThrombin; CorrigeFichiersSequencage; CorrigeGluOli; CorrigeLesBrocOlis; CorrigeLesRebuildedBrocOli; CorrigeLesSujetsDesBrocoli; CorrigeLesSujetsDesMultiples; CorrigeRec2; CreeLaBaseSqlonage; CreeLaTableSignals; CreeLesFichiersExtension5PrimeDeRec2PourTous; CreeLesRec1DeDidier; CreeLesRec1PourTousLesVirtualPPCR; CreeLesRec2PourTousLesVEDidierCompatiblesGscope; CreePrimers; EtatsDesVE; FindVector; Fusion5P; GenesSurPlamides; InventaireDesBrocOli; InventaireDesGluOli; InventaireDesPEntr; InventaireDesSignauxGroupes; LeBonOrdrePourLesSignaux; LeDecompte; LeFichierDesSignaux; LeGrandResume; LesAliasLesPlusProches; LesBornesParLambdaIntegrase; LesClefsDeDidier; LesEtatsDesVEs; LesLongueursDesProteines; LesOligosCommandes; LesOligosDuPGS; LesScientistsDeDidier; LesSignaux; LesSignauxDuFichier; LesVEDidierCompatiblesGscope; LesVirtualPPCRsDuPGS; LocalisationDesVirtualPPCRs; lso; MergeOligosKeepers; MiseAJourDesPDesExistings; MiseAJourFormulairePourMichel; MiseAJourSpineParVEDidier; MultiplesSujetsDesP; MutantsDeYann; NKI; OligAuto; PEntr; PEntrDidier; QuelleCoupure; QuelleCoupurePourTous; Rec1; Rec2; RecupereLesVieuxP; RetireAttB; RetrouveLesVEsDeDidier; SelectFromVEDidier; SEQAttB1; SEQAttB1Adapter; SEQAttB1AddToInvitrogen; SEQAttB1Begin; SEQAttB1Invitrogen; SEQAttB2; SEQAttB2Adapter; SEQAttB2AdapterRaC; SEQAttB2AddToInvitrogen; SEQAttB2AddToInvitrogenRaC; SEQAttB2End; SEQAttB2EndRaC; SEQAttB2Invitrogen; SEQAttB2InvitrogenRaC; SEQAttB2RaC; SEQAttL1; SEQAttL2; SEQAttL2RaC; SEQAttR1; SEQAttR2; SEQAttR2RaC; ShowCorrespondingFile; ShowLesOligosDuPGS; ShowLesRec1DuVirtualPPCR; ShowLesVEDidierDuPGS; ShowLesVirtualPPCRsDuPGS; ShowVEDidier; StoreSignal; TestBrocOli; TestCorrectionPourThrombin; TestLambdaIntegrase; TestLambdaIntegrase2; TestLocalisationDesVirtualPPCRs; TestSignalsInside; Thrombin; ThrombinOld; TousSens; UrlCommandeOligo; VE; VectorsRecuDeDidier; VEDidier; VeFromSbgpDatabase; VerifieLesRec2; WebOrder; WithBrocOli
gscope_clotools.tcl (annotations | original): AfficheSlidingCodonRare; AfficheSlidingCodonRarePour; BaClon; BaClonAppend; BaClonExists; BaClonSet; BaClonUnset; CheckRestrictionEnzymes; ChoisisWindowSizePourSlidingCodonRare; CompositionDesSequences; CreateCommandeSigmaFromIgbmc; CreeLesOligosManquants; EntammePourMeltingTemp; IUPAC; MatOl; MiseAJourOligosExisting; OperonClonage; OperonNancy; OperonNancyCreateSequences; OperonNancyInforme; PositionDuPatternDansFichierTFA; PositionSurMatrices; PositionSurMatricesPourTous; RepareLesRebuilded; RestrictionEnzyme; RestrictionEnzymesStatistics; ShowCloning; ShowRestrictionEnzyme; SignalReverse; SlidingCodonRare; SupprimeDoublonsDansMatricesOfOligos; TestHdac; TMDeLaSequence; VerifieLesMutantsPourClonage
gscope_collection.tcl (annotations | original): AdnFictifPourCollection; AfficheAssocie; AfficheGenscanDuContig; AfficheLesSortiesDuBallast; AffichePeptideSort; AffymetrixAccess; AffymetrixAssocie; Alias; AliasDansTfaPourTous; AliasParNomDuFichier; AliasPourTous; AnchorsCount; AppendFOF; ATGAenOverlap; BannisLePAB; BetterStartCodon; Blast; BlastDesHitsHumainsDuProfil; Blaste; BlastPDeLaPreditePourTous; BlastPPourCollection; BlastXdeADN; BornesDuGeneEtendu; CAI; CasimirCutted; CetOrdre; ChampsInteressantsDansTexteEMBL; ChargeNarcisseDuAlias; CheckCompletion; ChoisisTonBlast; CleanSpace; CodeClone; CodeCloneDuAffymetrix; CodonsRares; CodonW; CompareChroContLoc; ComplementInfoPourTous; CompteLesStartCodonsOk; ConsacreVersusPredite; Cousins; CreeAccessAliasDefinitionPourPeroxNew; CreeBanqueBlastDuFichier; CreeBornesDesCDNAs; CreeBornesDesPABsAvecTFAs; CreeBornesDesPABsLoc; CreeBornesDesPABsPourUneCollection; CreeFOF; CreeLesBanquesBlastDesTFAsPourTous; CreeLesCDNAsDeRegine; CreeLesCoBlastn; CreeLesCoClustalw; CreeLesCopains; CreeLesFichiersTFAsDesMeilleursCopainsDuBlastPourTous; CreeProteomeAvecUneListeAccessAliasDefinition; CreeTfaPourCodonw; CreeTousLesRapportsPourAccess; CreeToutesLesNotesPourCDNA; CreeUneBanqueBlast; CreeUneBanqueBlastDuBlast; CreeUneBanqueBlastDuPAB; CreeUneBanqueBlastDuTFAs; CreeUnTFAs; CreeUnTFAsDesListesBidAccess; DecortiCohen; DecortiqueBlastPCDNA; DecortiquePeptideSort; DecortiqueSortieRepeatMasker; DeleteBallast; DesNouvellesSequencesPourGscope; EstCeVraimentUneNouvelleSequence; EstUneFusion; ExtraitLesSequencesDuTFAs; FamiliarOrganism; FamiliarTaxId; Family; FormatDesNumerosPourCollection; FourBasesOverlap; FragFrom; Fusion; GeneEtendu; GlimmersPerdus; HistogrammeDuCAI; ImprimeLesOrgaEtSesPlaces; InformeIdentitesDuCDNA; InformeIdentitesDuCDNAPourTous; InformeLaFusionAvecProttfa; InformeLaFusionAvecProttfaPourTous; InformeLeCopain; InformeLeCopainSansDemander; InformeLesCopainsDeThetase; InformeParChangementEnteteDuChamp; InformeValiGNParAlias; Inventaire; IsNuc; IsProt; JumeauRepresentatif; Jumeaux; LaListeNomAlias; LaTotalePourLesCDNAs; LesAffymetrixDuOwner; LesAffymetrixEnOverlap; LesAiresCliquablesDuHTML; LesAliasExistants; LesBornesDeChroContig; LesBornesDesGenesEtendus; LesCDNAsEnOverlap; LesClassesDuGlossaire; LesCodeCloneDesAffymetrixEnOverlap; LesGenomesCompletsBizarres; LesLocalisationsSurChroContig; LesMauvaisInfos; LesMeilleursCopainsDuBlast; LesOubliesParGscope; LesPABsDansLOrdre; LesPABsDuTFAs; LesPlusProchesPABs; LireHori; ListeDesFusions; Maigrir; MapCliquable; Maquille; MaquilleLeMSF; MaquillePourTous; MeilleureLocalisationSurChroContig; MeilleurPdbDuBlast; MeilleurPdbDuMsf; MeilleursCopains; MeilleursCopainsDuBlast; MeilleursCopainsDuBlastPourTous; MergeLesPolylocalise; MoveLesReMask; MSFPourCollection; NarcisseDansLOrdreDesPABs; NarcisseDuAliasPourTous; NearestOrganismsHit; NettoieTriBlast; NewGenes; NomDuAlias; Nommenclature; OldCreeBornesDesPABsLoc; Ordali; OrdaliDuTexteMSF; OrganismeDuPAB; OrganismeFormate; OrthographeCanonique; OwnerOfCDNA; PartieNomsDesSequencesDuBlast; PeptideSort; PetitGscope; QuelleFonte; QuelsCopainsDisponibles; QuiManque; QuiTouche; QuiToucheCeChromosome; ReAligne; ReAlignePourTous; RechercheLesAccess; RemoveMito; RepartitionDesOverlaps; RepDesNucPourCodonW; RepriseDesVieuxInfos; RepriseDuGscope; RestrictionMap; RetireNarcisseDesMSFs; RetourneBisAccess; SameOrganism; SampledOrganism; SansAmbiguite; SeqElong; ShowHTMLBox; StockeLesSequencesEtMaquilleLeMSF; StopCommeGlimmer; Taxonomy; TBlastNDuConsacreDeLaPreditePourTous; TDP; TestEstCeVraimentUneNouvelleSequence; TestRetourne; TexteTFAsDesMeilleursCopainsDuBlast; TFAsDeLaListe; TooCloseOrganism; TriLesLocalisations; UneNouvelleSequencePourGscope; VerifieAgam; VerifieLesNarcissesDesMutants; VerifieLesPDBs; VoirADNduContig; VoirLaMeilleureLocalisationDuCDNA; VoirLesLocalisations; VoirLesLocalisationsDuCDNA; WithOverlapAffymetrix; XtoN
gscope_daedalus.tcl (annotations | original): ChampDaedalus; DaedalusFlatFileDeLaListe; DaedalusFlatFileDuBlastP; DaedalusGetz; DaedalusHit; DaedalusHits; DaedalusHitsDuBlastPPourTous; DaedalusSrsbuild; InformeAvecDaedalusHitPourTous; TTT
gscope_dessins.tcl (annotations | original): AfficheLeBlastNDuContig; AfficheLeSpectreGC; AfficheLeSpectreGCenCouleur; AfficheMsfFamily; AfficheORGAorgaDesMSFs; AfficheTexte; AnalyseLeBlastN; BlastNDesContigsPures; BlastNDUnOrgaComplet; CanvaDuRectangleDegrade; ChoixDesGenomesCompletsPresentsAbsents; ClassFromIdSvg; CoGlimmer; CompositionEn; ComptonsLesSolitaires; ComptonsLesStartCodon; ConcateneLesContigs; ContigDuPAB; CorrigeAnabaenaNostoc; CorrigeOo; CouleurAuNombreDeCopainsDansBlast; CouleurParTypeEtNom; CreeClasseDesOrganismes; CreeCorrespondanceAvecGlimmer; CreeGIF; CreeLaBanqueBlastN; CreeLaBanqueBlastPureSansTroncon; CreeLeFichierCompositionEnATGC; CreeLesBornesDuBlastN; CreeLesFichiersSpectreDesGC; CreeOrthoBlastP; CreeOrthoTBlastN; DecalageAngulaireRosace; DefinirLaCouleurAuLancement; DetecteLesMauvaisOrganismes; Devoile; DismissToutesLesFenetres; DotPlotADN; DotPlotBlastN; DotPlotDesInteressants; EnMajuscule; EntreDansCoeur; GetSignification; Graphe; GrapheDuFichier; GrapheExpressedTissuesOLD; GraphesEnStock; GrapheVecItem; GscopeBoard; HIDDEN_MiseAJourHtml; HistogrammeDesGC; HsapiensGeneDefLoc; LaListeToBeOrthologue; LesGenomesDansLeBonOrdre; LesHomologiesDuBlastN; LesOrganismesOrthologues; LesZonesDuBlastNEnOverlap; MaxiDeLaListe; Milieu; MiniDeLaListe; NomDeLaFrame; NomDeScene; NouveauPack; ORGAorgaDesBlastPs; ORGAorgaDesMSFs; ORGAorgaDesOperons; ORGAorgaDesTBlastNs; OrgasAbsentsDesGenomesComplets; OrgasHesitantsDesGenomesComplets; OrgasPresentsDesGenomesComplets; OrthoBlastP; OrthoTBlastN; OverlapDeUn; pack; PhylumDuGenome; PhylumDuOC; PhylumDuOrganisme; PiqueArc; PointeDotPlot; PresenceEtAbsenceDesGenomesComplets; RACtoTFA; RecapitulatifDesOrthologues; ReColore; RecoloreLesBoites; RecoloreLesLinges; RecoloreUneBoite; RecoloreUnLinge; RectangleDegrade; RedefinirLaCouleur; RedefinirLaCouleurDuLinge; RedefinirLeFard; ReelVersEcran; ReOrdonneOoMSF; ReParDefaut; ReTexte; RetexteUneBoite; RscopeBoard; SauteSurCible; SB; Scene; SetListeDesPresentsAbsents; SetSignification; SignificationLingeFrameFard; Sock; SortDeCoeur; Student; TesteRepereBox; TesteSavantEnBatch; TestGraphe; TestMDScore; TestStudent; TGO; TkH; ToBeOrthologue; TopoDuBlastN; TresseVRP; TrogStatus; VecItem; VecteurVRP; VerifieOrthoBlastP; VerticalNames
gscope_elegen.tcl (annotations | original): AllEleGen; AnnotRep; AnnotType; AnnotVerif; AnnotXdn; AnnotXdnFinal; BaseCount; BonChr; CreateAllChrFinal; CreateChrAnnotFiles; CreateMotifRecouvertParExon; CreateMotifsMapping; Decompte; DecompteGeneral; DoAllPourTous; DuFinal; EditMotifsFileAvecArgument; EditMotifsFileSansArgument; EleCoherence; EleGen; EssaieListeRandom; FichierDistanceCSM00000; InfoDeLaZone; InfosEtBornesDuFinal; InfosEtBornesDuFinalPourTous; ListOfChr; MappingOfMotifsWithLengtAndCardinality; MappingOfMotifsWithLengtAndCardinalityLevure; MappingOfMotifsWithLengtAndCardinalityPourTous; MappingOfMotifsWithLengtAndCardinalityPourTousLevure; MappingOfMotifsWithLengtAndCardinalityPourTousRandom; MappingOfMotifsWithLengtAndCardinalityPourTousRandomLevure; MappingOfMotifsWithLengtAndCardinalityRandom; MappingOfMotifsWithLengtAndCardinalityRandomLevure; MotifMapping; TestAllEleGen; TranfoChr; TrieListRandom; VerifieAllChrFinal
gscope_export.tcl (annotations | original): AfficheFichier; AfficheLEnvironnementDeGscope; AfficheLesBoutonsNonOpen; AfficheLesFichiers; AfficheLesFichiersApresSplit; AfficheListe; CaVa; cava; CodeSecret; CreateTreeFromDirectory; Environ; FormatMode; FormatSize; GetAbsolutePath; iii; NouveauBouton; OffreLesMots; ShowDirectories; ShowTreeFromDirectory; SortColumnForTreeView; TrieEtAffiche
gscope_fourmis.tcl (annotations | original): BonAngle; BougeFourmi; Boules; BoulesArcEnCiel; BoulesTriColor; BouleSurTete; CentreFourmi; DrawFourmis; GoNoGo; InitFourmis; MeetBall; MeetBallArcEnCiel; MeetBallTriColor; OnSortPas; Plateau; SortiePlateau; StartFourmis; tangle; TourneFourmi; TourneListe; UnMur
gscope_go.tcl (annotations | original): AllForGo; CompareDeuxSetsDeGenes; CompareGoCounts; EstUpDown; GoAncestors; GoChildren; GoCollectInfo; GoGetAncestorsForSet; GoGetEnrichment; GoGetFromGene; GoGetFromGeneList; GoGetFromGeneListAsLists; GoGetFromGo; GoGetFromGoList; GoGetFromPfam; GoGetFromPfamList; GoGetInFile; GoGetInfosFromGeneListByGO; GoInfo; GoNext; GoOntology; GoParents; GoSpecies; GoStore; GoTermType; GoTermTypeIn; GoTestAll; GoWalk; ihr; InformeGoPourTous; MyGenesFromGo; MyGOsFromGene; ShowGo; ShowGOs; UpDownCommeIlFaut; VerifieDoublonsDansGo
gscope_hda.tcl (annotations | original): AfficheBilanXHda; AfficheLeClusterXHda; AfficheLesInfosDuCluster; AfficheLesMembresDeLaFamille; AffichePourLaFamilleHDACroises; BidAccessDeLOrganisme; CoherenceDesFamilles; ColorationDesClustersXHdaDesNomsPiques; CorrigeBspBaph; CreeBilanIndividuel; CreeEtAfficheUnBilanHDACroises; CreeLesFamillesDesSelectionnes; CreeLesFamillesDesSelectionnesPourTous; CreeListeCandidatsPour; CreeUnBilanHDACroises; CreonsLesLoupesRR; DessineBilanHDACroises; DevoileLesValeursHDACroises; DisplayBilanHDACroises; DpcShow; HomologDetectionAgreement; InfoDuCluster; LaFamilleElargie; LeBilanTriePourJean; LeClusterXHda; LectureBilanHDACroises; LesAccessDesOrganismesSample; LesInfosDuCluster; LesLoupes; LesLoupesDe; LesLoupesDeTous; LesLoupesDiaBac; LesMembresDeLaFamille; ListeDesFamilles; LitLoupesParORGA; LitLoupesParPAB; NarcissePourLOrganisme; NewHDACroises; NewHDACroisesPourTous; OntologyDesClusters; PourNuca; PourNucaPourTous; ProtocoleXHDA; RelitFichierNuca; RenommeBilan; ReunitLesBilansXHDA; SauveBilanHDACroises; SauveBilanHDACroisesDuCanvas; ShowHDACroises; TexteHDACroises; TriBilanHDACroises
gscope_homolog.tcl (annotations | original): ChargeLesOrganismesAyantMemeOperon; ChargeLesOrthologuesDe; ChargeLesParaloguesDe; ChargeLesPositionsDesOrthologues; ChargeOrthologueDans; CompteDesOrganismesAyantMemeOperon; CouleurSuivantOrganismesAyantMemeOperon; CreeLeFichierExpectDans; CreeLeFichierOrganismesAyantMemeOperon; CreeLeFichierOrthologueDans; DiffTaillesDesTroisOrthologuesDuMSF; DiffTaillesDesTroisOrthologuesDuMSFPourTous; DotPlot; DotPlotParalogues; ExisteOrthologueDans; HistogrammeDuNombreDeParalogues; ListeDesOrganismesAyantMemeOperon; NombreDeHomologues; NombreDeOrganismesOrthologues; NombreDeOrthologues; NombreDeParaloguesDe; NombreDOrganismesAyantMemeOperons; OrganismesAyantMemeOperon; OrganismesOrthologues; OrthologueDansTBlastN; OuATapeBlastX; OuATapeTBlastX; ParaloguesDe; PositionsDesOrthologues; RelieLesOperons; SautParalogue; TestYaOrthologue; YaOrthologue
gscope_html.tcl (annotations | original): AfficheMoi; AnalyseMoi; ATV; ColorHexa; ContenuDuFichierAvecReferences; ContenuMisAJourDuFichier; CssWscope; CurlOLDmarchePAS; DerniereVisite; DescDuRepertoire; EnvVars; Expe; FicheMoi; FileMoi; FileMoiAlias; FileMoiRetinalGene; FileMoiSearchList; FileMoiSignalIntensityImages; FormulaireOliWeb; FromEutilsNCBI; FromNCBI; GenoretGenesUrl; GenoretScience; GenoretServer; GenoretUrl; GetPdbForNgl; GuideMoi; H_AskAndGetFile; H_BalAtt; H_Balise; H_Balises; H_Bold; H_Center; H_ChoixParmi; H_Close; H_Color; H_ColoredLetters; H_Face; H_Font; H_Href; H_Italic; H_LogoBInG; H_MorceauxChoisis; H_Open; H_Pivot; H_Redirect; H_StyleClassePourBalise; H_TexteArea; HrefPourGetz; Html_Append; Html_BackTo; Html_Balise; Html_BaliseClose; Html_BaliseOpen; Html_Banner; Html_BeginBody; Html_BeginHtml; Html_BodyToEnd; Html_BR; Html_Doctype; Html_DuFichierJpg; Html_DuScript; Html_DuTexteTelQuel; Html_Encapsule; Html_EndBody; Html_EndHtml; Html_Get; Html_GetPosition; Html_Header; Html_Href; Html_Insert; Html_lGet; Html_Listbox; Html_ListOfRefs; Html_NewLine; Html_SymTree; Html_TableFromList; Html_Teletype; Html_TextToListbox; Html_TheEnd; Html_Title; Html_TouchePour; Html_UTF8; Html_Zero; Html_ZeroToBody; HtmlAuthorize; HtmlServer; HtmlServer64; HttpCopyRR; HttpGetTextFromUrlRR; HttpGetUrl; HttpProgressRR; HttpReferer; InsereHrefAccessDans; InsereHrefSeqcheckOligoDans; LbgiUrl; LocaliseLesTfasDuSeqCheck; LogExpe; NglViewer; OliWeb; Pubmed; RechercheMoi; ReferenceGscope; RepereBoxEtFileMoi; RequestUriFromWscope; Science; ScienceEtCommandeDeQueryString; ScienceIsPublic; SciencePublic; Test_H_Open_Close; TestFormatQuery; TexteEntreChevrons; TouchePourWscope; WebInforme; WelcomeToMe; WelcomeToWscope; Wget; WgetzSurWeb; WscopeApplet; WscopeCgibin; WscopeLinks; WscopeScience; WscopeServer; WscopeSite; WscopeWebForm; XpertComment; XpertCommentNew
gscope_lca.tcl (annotations | original): BelleVueMutation; CollecteMutationMTM; CollecteMutationMTMForType; CompareMTM; CorrigeLesInfosLCA; CreateSqlForLCA; ExtractMutationFromRetinaHtml; FusionneMutationMTM; FusionneMutationMTMPourTous; GoodCodeForPredictedChange; InformeRDH12; LCA; LesLca; LesMut; LesMutations; MergeMTM; MTM1; MutationMisSensProtein; MutationMTM; MutationPolyVB; MutationRR; MutationVB; RDH12; RDH12CodificationFromGal; RDH12PatientAndMutation; RetGeneMutation; RetGeneMutationOnWeb; ShowMutationOnWeb; StoreSeqMut; TesteLesMutationsLCA; TestMutationMTM; VerifieLesInfosLca
gscope_lego.tcl (annotations | original): FichierModAssocie; GappedSeqAAFromGappedSeq3d; Lego; MsfAAFromMsf3d; Seq3dAndA5From; TestLego
gscope_liste.tcl (annotations | original): A_Voir_LesBanquesDesEntetesDeFrag; AffecteListeDesPABs; AfficheLesDescriptifs; AfficheLesDescriptifsDuMSF; AfficheLesOrthologuesFamiliersDuBlastP; AfficheReordonneMSF; AfficheRognure; AlignonsLesParalogues; AlphaNum; AlwaysTrue; Arboot; Aujourdhui; BlastHitCount; ChampDuDescriptif; ChargeLesARNs; ChargeLesGLIMMERs; ChargeLesInterGenes; ChargeLesPABs; ChargeLesTRNAs; ChargeLesTROUs; ChargeListeDeBoites; ChoisisLeCritere; ChoisisUneGrille; ChoisisUnTamis; ChoixDansLaListe; ChoixDansLaListeFait; CouleursDuBleuAuRouge; CouleursDuRougeAuBleu; CreationDuNalDesGenomesComplets; CreeLeTasTamis; CreeStartCodonSummary; DecrisLaLigne; DiffBlaAli; DifferentielBlastAlignement; DifferentielBlastAlignementPourTous; DupliqueLaBaseGscope; Echo; Entier; EstUnFichierBlastP; FeuilleDist; FichierBlastPDuPAB; FichierMiniConfig; Flottant; FromDisphy; FromDisphyOf; FromRef; GardeQueLesMinusculesDesDescriptifs; GCContent; GCLevel; Hydrophobicities; Hydrophobicity; IllumineSuivantLesGroupes; InformeClassePourTous; InformeParClonage; InformeParClonagePourTous; InformeParNarcisse; InformeParNarcissePourTous; InformePourTous; LaManierePourAffiche; LeDescriptif; LeDescriptifDuPAB; LesAccessDuAPN; LesBanquesDeLaFerme; LesBanquesDuNal; LesChampsInteressantsDeNarcisse; LesDefinitionsRevisitees; LesFantomes; LesMetsTropLoin; LesOrthologuesFamiliersDuBlastP; LesParaloguesDuBlastP; LesParaloguesDuBlastPPourMs; LesParaloguesDuMSF; LesSeuilsAC; LesSeuilsCAI; LesSeuilsGC; LesSeuilsMDScore; LesSeuilsOperonsHomologues; LeTamis; ListeDeBoites; ListeDesARNs; ListeDesGLIMMERs; ListeDesJumeauxRepresentatifs; ListeDesPABs; ListeDesTRNAs; ListeDesTROUs; ListEqual; ListsComplement; ListsIntersection; ListsUnion; ListTranspose; MDScore; MDScoreAvecSelection; MDScoreAvecSelectionDuFichier; MiseAJourBornesDesPABs; MiseEnPageDuDescriptif; MMm; MontreSecator; MSFSelection; NoCo; NommeEtStockeLeTamis; Normd; NormdEnStock; NormdPourTous; Nouveau_LesBanquesDuNal; OldPourcentageDeGenomesCompletsOrthologuesDansDbClustal; OrgaDuDescriptif; OrganismeDeLaBanqueBlastN; PhyloBreak; PhylumsOrthologues; PlaceDuPAB; PourcentageDeGenomesCompletsOrthologuesDansDbClustal; PourcentageDeGenomesCompletsOrthologuesDansTBlastN; PourcentageDeStops; PresentationDesPABs; QuelInterval; RapportDuDifferentiel; RechargeListeDesPABs; ReconsidereLesDifferentiels; RefOfAC; ReorganiseLesDescriptifs; RetireLesAccessDuMSF; SauveLeTamis; ScanCOV; SelectionneCeCritere; SetOptions; ShineDalgarnoSiNouveauMet; ShowDifferentielBlastAlignement; SplitLeGrosGenbank; StartCodonSummary; StockeLeDescriptif; Tamis; TasTamis; TesteTamis; TestLesDescriptifs; TestListTranspose; TestOrgaDuDescriptif; TestSetOptions; tnal; Today; Tok; ToutSurLesEntetesDeFrag; TroisBoots; TSOH; ttok; ValeurBoot; ValeurDist; ValeurFeuille; VerifieLesGenomesCompletsIGBMC; VraisParaloguesDe
gscope_macsims.tcl (annotations | original): AddConservationToMacsims; AllAboutMacsim; AllAboutMacsimPourTous; CanvaVirtuel; ClickDansSeq; ConvertToMsf; CouleurDeLaLettre; CouleurSeqlab; CreateAllHtmlFromXmlMacsim; CreateBlastDatabaseWithTfasDesCopains; CreateMacsimRsfFromMacsimXml; CreateMacsimRsfFromMacsimXmlPourTous; DecortiqueUnMacsimXml; DecortiqueUnRSF; DessineMoiLaTaxonomy; DessineMoiLesMSF; DessineMoiUnMSF; DessineMoiUnRSF; DetecteCopainsDoublons; DifferentColor; DoctypeForMacsim; DoctypeForOneSpineTarget; DuRSF; ElimineLesMacsimsIncomplets; EntreDansSeq; FeatureSequence; FromMacsim; GetOrderOfAlignment; GlobalFromLocal; GroupEtNonSubgroupDansXml; GroupMacsimsAvecFnote; GscopeID; H_JavascriptPourWaliLite; H_StyleDesCouleursColSco; H_StyleDesCouleursFtype; H_StyleDesCouleursSeqlab; H_StyleImageTransdot; H_StyleSpanPadding; HtmlFromMsf; HtmlFromXmlMacsim; JalviewHtml; LaFtableDansLOrdre; LaSequenceColoree; LesCouleursSeqlabDesAAs; LocalFromGlobal; Macsims; MacsimsFromText; MacsimsInfo; MacsimsOnWeb; MacsimsVariables; MergeXmlForSpine; MergeXmlForSpinePourTous; ReadAllSpineXML; ReglePourAli; ReordonneRsf; RewriteXmlMsaToMacsim; RewriteXmlMsaToMacsimPourTous; RsfFromRsf; RsfFromXmlMacsim; RsfProtXFromRsfNucX; RunAAM; ShowTarget; SiteBips; SortDeSeq; SpineID; TailleDesTFAsDesCopains; TENRR; TestDecortiqueUnMacsimXml; TestDecortiqueUnRSF; TestFromMacsim; TestMacsimsInfo; TestMacsimsOnWeb; TheTrueMacsimsFile; UseExistingJalviewHtml; XmlFromRsf; XmlFromRsfMacsim; XMotifsFromRsf; XMotifsFromRsfXX
gscope_macsimsql.tcl (annotations | original): ClustName; ConvertToPkMacsSeq; CreateSqlFromChildOfAlignment; CreateSqlFromNodeColsConsFreeSurf; CreateSqlFromNodeSequence; CreateSqlFromXmlMacsims; CreateSqlFromXmlMacsimsFromDirectory; CreateSqlFromXmlMacsimsPourTous; ExtDbEntry; GetFreetextFromSql; GetMacsimSFromSql; InsCommun; IsColsConsFreeSurf; IsPk; MacsimsCodification; NodeSequence; QueryMacsims; QueryMacsimsLinkedInfo; QueryMacsimsSeq; QueryMacsimsSeqFeature; QueryMacsimsSeqInfo
gscope_math3d.tcl (annotations | original): Angle_R; AngleDeg; AngleEntre; AngleRad; Axe_R; Between0And2Pi; Coord; Doublet; ErreurMath3D; IsScalar_M; IsScalar_V; IsVector_M; M_create; M_fromM; M_invM; M_lMM; M_MM; M_Mwithout; M_R; M_SM; M_T; M_tM; M_unit; M_xMM; Nice_M; Nice_R; Nice_V; nUplet; oldM_invM; Pi; R_create; R_M; R_unit; S_deterM; S_fromM; S_fromV; S_nV; S_VV; Scalaire; Sign; Simplet; T33_invT33; T_M; T_T; T_V; testAngleEntre; TestM_lMM; TestMath3D; Triplet; V_create; V_fromM; V_fromV; V_lVV; V_MV; V_nV; V_SV; V_T; V_unit; V_VM; V_VS; V_VV; V_Vwithout; Vecteur; Vectoriel; xDoublet; xTriplet; yDoublet; yTriplet; zTriplet
gscope_misc.tcl (annotations | original): AAduCodon; AAStart; AddOrganismToOrgaCode; AfficheArbre; AfficheLesSortiesBlast; AfficheUneSequence; AfficheUneSortieBlast; AfficheUsageDesCodons; AideEnLigne; AlignePar; Aligneurs; AppendEtRetourneDistance; ArbreBootstrapEnListe; ArbreBootstrapEnListeOld; ArbreEnListe; ArkaeaLike; BeauCodeGenetique; BeauGN; BeauScore; BestDefinitionOfBlastP; BestDefinitionOfBlastPPourTous; BestDefinitionOfBlastX; BestDefinitionOfBlastXPourTous; BestDefinitionOfDbClustal; BestDefinitionOfDbClustalPourTous; BestDefinitionOfLeon; BestDefinitionOfLeonPourTous; BlastWithAllExpectsToZero; BlastXsurZone; Boo; BornesDeSeraphinVersCasimir; BoutADN; BoutADNDuTFA; BoutADNDuTFAOldVersionSansMemoParFichier; Cas; CasimirDu; Censure; CetteFeuilleEstLaCible; CG; ChangeLaCommande; ChangeOrdrePhylo; ChaqueHitDuBlastP; ChaqueProteineDuBlastX; ChaqueProteineDuTBlastN; ChargeCodonPreference; ChargeLesCodonsStart; ChargeNombreDeCopainsDansBlast; ChargePhylons; ChargeSeraphinEtCasimir; ChoisiEtAjouteChampsInfo; ChoixDesPresents; ChoixGN; ChoixMultiple; ClasseFonctionnelle; ClasseFonctionnelleDansFonctionsValidees; ClasseFonctionnelleDansInfo; ClasseNormalisee; ClosCanalEtMontreBlaste; ClosCanalEtMontreMSF; ClosExpoCourante; ClosGalerieCourante; ClustalX; CocheAligneurs; CochonsLes; CodeGenetique; CodonsDuAA; Colle; CompareADN; CompareADNDesFichiersTFA; CompareADNDesTextesTFA; CompareLesARNs; CompareLesExpectsDesSegments; CompleteLeFichierErreurs; Comptons; ComptonsLesATGC; ConcordanceNumerotationDesIntergenes; CoordDuCourant; CopieLeMeilleurCopainsInfo; CorrigeLesOrganismesDansDisphy; CorrigeLesOutliers; CorrigeValiGNSiPresenceName; CouleurDePeau; CouleurDePeauOsOc; CourtOS; CreateRandomTfa; CreeADNetTDNetRAC; CreeADNetTDNetRACaPartirDuFichierBrut; CreeExpo; CreeGalerie; CreeImagette; CreeLeFichierDansNucTfa; CreeLeFichierDistancesPhylo; CreeLeFichierFonctionsDecouvertes; CreeLeFichierFonctionsValidees; CreeLeFichierNombreDeCopainsDansBlast; CreeLeFichierPhylo; CreeLesFichiersNucTfa; CreeLesFichiersPhylos; CreeLesFichiersTfas; CreeLesFichiersTFAsNUCsAvecBornesDesPABsEtADN; CreeLesInfosDesTRNAs; CreeLesInfosDuGenescope; CreeOuATapeBlastX; CreeOuATapeTBlastN; CreePourcentageIdentite; CreeToutesLesNotes; CreeToutesLesNotesPourCollection; CreeToutesLesSynthetases; DecortiqueBlast; DecortiqueBlastCommeBlat; DecortiqueBlat; DecortiqueFetch; Dedouble; Definition; DefinitionApproximative; DefinitionDuAccess; DefinitionRapide; DeleteJunkdir; DeleteLesTmp; Deselecte; DessineOrgaEtSesPlaces; Detoure; DiagnostiqueLesPhylosFolles; DiagnostiquePhyloFolle; DismissToutCePAB; DuGrec; EffaceCourant; ElimineLesEnterres; EnsoleilleLaSelection; Entoure; EspeceNormalisee; EstPABouTROUouTRNAouARN; EstUneFeuille; EstUnPAB; EtudieAccess; EtudieCourant; EtudieLesNucleiquesDe; EtudieLesProteinesDe; EtudieUneSortieMSF; Expose; ExpressionReguliereDesPABs; ExtractRandomLinesFromFile; ExtraireDe; ExtraitInfo; ExtraitTouteInfo; Fard; FetchCat; FetcheCourant; FetchNoms; FetchTest; FiabiliteFonction; FichierFOF; FormateSequence; Glossaire; GNduMarque; HauteurDe; Histogramme; HistogrammeDuFichier; HistogrammeDuNombreDeCopainsDansBlast; HistogrammeDuTas; IllumineLeGroupeDe; InfoInteressante; Informe; InformeFromBestBlastHit; InformeFromBestBlastHitPourTous; InformeLesMetsCorriges; InformeParMiseAJourPourTous; InformeParSuppressionDuChamp; InformeParSuppressionDuChampPourTous; InformeSansDemander; InformeSansDemanderParWscope; KillPython; KillQds; Lance; LargeurDe; LesChampsInteressantsDuAccess; LesFrames; LesHitsDuBlast; LesNomsPiques; LesOffsetsDePfur; LesOrgasDesAccess; LesPresentsAbsentsIndifferents; ListeCompressee; ListonsLesTrous; LoadTxl; LoadTxlWithRowsOfCells; MarqueLesErreursDeSequence; MenageLesTmp; MetExtreme; MiseAJourAvecLesInfosDuGenoscope; MiseAJourDesNouveaux; MiseAJourDesPABCrees; MontreCourant; MontreNomSuperClassePI; MontreOrganismes; MontreTousCeuxQuiSont; MoyenneDesPourcentages; MultiAlignePlusieursAby; NJPlotMSF; NJPlotPH; NombreDeCopainsDansBlast; NomCompletDeLaSuperClasse; NomDeGene; NomDeGeneIssuDeDefinitionApproximative; NomDeGeneIssuDeDefinitionApproximativePourTous; NomDeLaFeuille; NomDuCourant; NormaliseTxlFieldName; Note; NucDuCodonStart; NucExtension5Prime; NumeroDu; OffsetDansEnteteSegAli; OrgaDuAccess; OrganismeDeLaLigneTBlastN; OrganismeNormalise; OrganismePrioritaire; OuATapeTBlastN; OutlierOrganism; OutlierOrganismInBlast; OutlierOrganismInBlastPourTous; OutlierScore; PartieSegAli; PcrProduct; PhyloFolle; Phylon; PhylonOrgaEtDistance; PiqueBox; PNApres; PointeLesErreursDeSequence; PreFixe; Presente; ProtDansNuc; PrrpDesMSF; PrrpDuMSF; PyroLike; QueDitCohen; QueDitYvan; QueryDuBlast; QuiEstLa; RandomAdnFromProteinSequence; RangeLeFichier; RangeLesFichiers; ReBaptiseLaSequenceGCG; ReBaptiseLaSequenceTFA; ReferenceClade; RemplaceAccessParOrganismeDansFichierPhylo; RemplaceAccessParOrganismeDansFichierPhyloPourTous; RemplaceAccessParPABPourTous; RenommageAFaire; RenommeExtension; RenommeLesTmp; RenommeTousLesFichiersDesSousRepertoires; RepereNuc; RepereNucOuBox; RepriseDesPABsCitesDans; ReprisePAB; RowsOfCells; SavePhylOrder; SeeADN; SeeBlast; SeqIn; SeqToTfa; SeqToTfaPourTous; SeraphinDu; ShowFile; ShowFileOld; ShowNuc; SignalDAutresHomologues; SimilitudeSurUneZone; SiteHybridisation; SixBlastPsurPique; SixBlastPsurPiques; SixBlastPsurZone; SoleilsDesBlasts; SoleilsDesTBlastNs; StatistiquesSurLesProteines; StopAvant; StopProchain; SuperClasse; TCNI; TestAAduCodon; TestArbreEnListe; TestCA; TestCG; TestChoixParmi; TestDecortiqueBlat; TestGlossaire; TestLODB; TestonsExec; TestPcrProduct; TestPDB; TestRowsOfCells; TexteOMO; TFAtoGDE; Toggle; ToggleCanva; ToggleTextePhylo; UsageDesCodons; UsageDesCodonsEtCodeCirculaire; Validation; ValiDE; ValiGN; VersPoubelle; VoisinADN; VraiDEDeLaLigneDE; VraiGNDeLaLigneGN; YaPABdans; YaPABenDebutDe; YaPABouTROUouTRNAouARNdans; YaPABouTROUouTRNAouARNenDebutDe
gscope_misynpat.tcl (annotations | original): AAType; AccessionDuMacsimXml; AjouteEntreesBiblio; AliFromOi; AliFromOiPoch; BestHumanHit; CompareLesSequencesPourMisynpat; CreateLinkInMacsimXmlMisynpat; CreateLinksToStructures; CreateProjectMSP; CreateProttfaDuSite; Editdb; EnleveDoublonsDansMisynpat; FeaturesdesMacsims; FeaturesdunMacsims; FroMac; FromTabSFOnDisk; InfoPubmed; InformeBestHumanHitPourTous; InformeMSP; InitDBMisynpat; LesVertebrata; ListeOrgMsp; MakeBlastDatabaseForEachProttfa; MiseAJourDatesBiblio; MiseAJourEntreesBiblio; MiSynPatAddStructuralModulesToMacsims; MiSynPatDir; MiSynPatMajDisease; MiSynPatStructuralModules; MiSynPatStructuralModulesAsFeatures; MiSynPatStructuralModulesForDatabase; MitoHs; MSP; MspBiblioGrowth; MSPFroMac; MspModule; MspRuns; Mut3L; NomDeMSP; OuSontLesMutations; PubmedField; RajouteMut3LAuTitre; ReplaceSequenceInAlignment; SchemaPFAM; SeqCalage; SeqCalagePourTous; SeqMac; SequencesDesVeryLast; SortByStart; SortLimits; SP; StructuralModuleColor; SurveillancePubmed; SynthetasesOfVertebrates; TabSFOnDisk; Testcode; testdb; TestMSP; TLN; TriParMoisAnnee; VerifieAccession; VerifieCoherence; VerifieLesMutations; VerifiePubmefInfoAFAIRE
gscope_oi.tcl (annotations | original): ArchaeaGenomesDeClaudine; ArClade; ArCladeOf; ArCladeOLD; BiggestHeader; BiggestHeaderPourTous; ClaudineArchaea; CompareArCladeAncestor; CompareCladeAncestor; ConvertFastaToUniprotStandard; CreeBlastDatabaseWithOiCode; GeEsFrom; GoldArchaea; Gyrase; GyraseTfasDesCopains; OiCode; OiCodeDoublons; OiCodeForDomain; OiCodes; OiCreateOrganismXml; OiDomain; OiDomainFromOiCode; OiLikeFishProteomes; OiProteomesDir; OiProteomeSize; OrderedClades; RefaireLesProteomesNonUniprotStandard; TestArchaeaGenomesDeClaudine; TestArClade
gscope_olymclade.tcl (annotations | original): BestGeneId; BlastOutliers; CaseRank; ChallengingClades; CladeChallenge; CladeCourant; CladesDistribution; CMC; DeltaDistributionForClade; GeneIdWithGoDict; GoGetShowFromGeneList; GoGetShowFromGeneListWithNom; HistoDelta; HistoPremier; HistoPremierMemo; JoyFungi; LesBacteriesDeClaudine; LesHitsAvecDelta; LesNomsPourOlymClade; Medals; MemoCase; MemoDelta; MemoDistri; MemoInfo; MemOlym; MemoZonards; ModelOrgaGeneId; ModelOrgaProject; MyGOsFromModelOrga; NearestColor; NIAG; NiceRank; OiDescendants; OlymClade; OlymCladeHelp; OlymMedals; OlymPodium; OlymStock; OutliersFromSelection; Paraph; PhylAr; RankSample; RunBlastOutliers; RunDeltaDistributionForClade; ShowDeltaDistribution; ShowDeltaDistributionForClade; ShowDistriHits; ShowHitsFromTaxoBlast; ShowHsapHits; ShowZonards; SshScore; TailleProteome; TaxoBla; TaxoblaProject; TestCladeCourant; TestMemoDelta; TestMoyenneRank; TousLesPremiersDuClade; TTLL
gscope_oo.tcl (annotations | original): OLDrroo; rroo
gscope_ordres.tcl (annotations | original): AttendreLeFichierDuServeurWscope; ChargeOrdres; CreeIndexes; CreeLeFichierGIF; CreeLesOrdresPourGIF; CreeOrdresTries; CreeSignifications; DecoupeEnSousOrdresPourGif; FaireAFaire; HTMLBoard; LanceLeServeurWscope; LesGenomesParListe; LesOrdresEntreIndexes; LesOrdresEntrePositions; LesOrdresPourGif; LesPanneauxPossibles; LesServeursWscopeQuiTournent; NeRejettePasLaBoite; NeRienFaire; NommeLesFichiersForum; OrdrePourGif; RejetteLaBoite; SoumettreAuServeurWscope; Td; TesteIndexation; TGR; ToujoursFaire; TrouveDescription
gscope_orfs.tcl (annotations | original): AfficheLesBlastXDesHitsMultiples; BlastNDesTrousPourTous; BlastXDesHitsMultiples; BlastXDesHitsMultiplesPourTous; BornesBonSens; CalculeLesORFsEnOverlap; CalculeLesOverlapsDe; CalculeOverlapEntre; CodonStart; CommenceIci; CoupeAuBonMet; CoupeAuBonMetPourTous; CreeChangeCodonStart; CreeChangeCodonStartPourTous; CreeExtendCodonStart; CreeExtendCodonStartPourTous; CreeLeFichierBornesDesIntergenes; CreeLesFichiersSequencesDesTrous; CreeLesPABsAbInitio; CreePAB; CreePABdesTrousCitesDans; CreePABPourTous; CreeStartCodonReport; CroqueMorts; Decede; DeletedStart; Enterre; EtendAuBonMet; EtendAuBonMetPourTous; EtudeCodonStart; Fantome; Fantomise; FantomisePourTous; FrappeQuUnCoup; FusionneLesBornes; Glimmer; Glimmer2; Glimmer3; HitMultiple; ItsAGene; LeMetDuPoch; LesBlastXDesHitsMultiples; LesFantomesEnFrameshift; LesHitsDe; LesHitsMultiples; LesZonesEnOverlap; LesZonesEnOverlapMultiple; LocaliseLeFrameshiftDuBlastX; LocaliseLesFrameshifts; MetIt; OldCreePAB; Overlap; OverlapAtStart; PossibleFrameshift; RejectIt; RenommeLesBlastX; StartCodonClusterPourTous; TestCodonStartEtDeletionDuMSF; TestCodonStartEtDeletionDuMSFPourTous; TestFrappeQuUnCoup; TousLesMetDuPoch; TrousLaTotale; VerifieLesOverlapsPlusGrandsQue; YaCodonStartEnPosition
gscope_orthoinspector.tcl (annotations | original): AuCongelo; BAIOX; BlastFromOi; BlastLocalInventaire; BlastLocalPourOi; BlastLocalPourOiEnProcessSepare; Blastong; Blastonh; Blastonl; ClearPassePlat; ClearPassePlatDansFiches; CreeBornesDesPABsTroisGradins; DernierCongelo; DernierePoele; DernierGz; DoneBlaston; DoneBlastong; DoneBlastonh; DoneBlastonl; GrilladinPourOi; HotdogPourOi; LengthReport; LesBlastsDuCongelo; LesLignesDuGz; ListBlastong; MissBlast; MyMissBlast; NettoieCongelo; OiCompressBlastonl; OiMiseEnPlace; OiOrgsFromBlast; OiSourceProteomes; OiSplit; OiSplitSize; OrdonnanceBlastong; PiqueAssiette; PiqueAssietteOld; PlateauOkOld; RangeTaxobla; ScienceOiDeMonDomaine; TaxMemo; TaxoblaDuCongelo; TaxoblaFromOi; TempsExecutionDesBlast; TestCodeOrga; WIW; WIWB; WiwOxFrom
gscope_outils.tcl (annotations | original): AffecteLesVariablesDeLaListe; AffecteLesVariablesDeReponse; AfficheLaProc; AfficheLaRechercheDansLesBody; AfficheLesProcs; AllerRetour; AllGlobals; AllToTitle; AppendAuFichier; AppendLaProc; AsciiToInteger; AttendreLeFichier; AttributsDeLaBalise; AutorisationPourPsy; AvecUpvar; Barycentre; Base10; Base64Decode; Base64Encode; Base64Test; BonParenthesage; BonParenthesageDuFichier; Boum; BoutonneLaFenetre; ButineArborescence; ButineEtAjoute; ButineEtRemplace; CanvaEnGIF; CanvaEnImpression; CanvaEnJpg; CanvaEnPNG; CanvaEnPostscript; CanvaEnPostscriptPourGif; Chabada; changeColorSpace; ChatAlannot; ChoixDuRepertoire; ChoixParmi; ChoixParmiDansListBox; ChoixParmiJoli; ChoixParmiJoliDansListe; ColorFromHSB; CompareDate; CompareLeDeuxiemeChamp; CompareLesFloats; CompareLesFloatsEnDebut; CompareLesIntegers; CompareLesIntegersEnDebut; CompareLesMilieux; CompareLeTroisiemeChamp; CompareSansPremierChamp; ComplementString; CompleteEtExecute; ContenuDuFichier; ContenuDuFichierSansAccent; ContenuSubstitueDuFichier; CopieVersFichierBienNomme; CopieVersFichierBienNommePourLeRep; CouleurDuNuancier; CouleurFormat; CreateDirIfAbsent; CreeLeRepertoire; CreeOreilleGeneraliste; CreerUnWidget; CreeUneNouvelleProcedure; Date; DateOfFile; Delimite; DemandeEtExecute; DenicheEtCompareLesIntegersEnDebut; DerniereLigneDuFichier; DetruitUnBoutonDe; Dialog; DialogPort; DirAbsent; DirExists; Echange; EditAndShow; EditeEtCreeFichier; Entre; EntreTexte; EraseLeCanva; Espionne; EspionneL; EspionneOldVoirPlusBasAvecArgs; EstUnFichierImage; EtendAuxDerniersTermes; EtendAuxPremiersTermes; Execute; ExecuteUnBoutonDe; FaireLire; FichierPourSaveAs; File; FileAbsent; FileExists; FilenameWithDate; FindTcl; Fleche; FloatApres; FloatEnFin; Focalise; FouR; FromProtUrl; FromTkCol; Garde; Generaliste; GenomicsFree; GetGlobal; GlobRecursif; Gonfle; GoodUnixFileNames; Gs; GscopeEvaluates; GscopeFile; GscopeFileContent; GscopeFileExists; GscopeLangue; GscopeSubDir; HexaToAscii; Hostname; HoteCourt; hsbToRgb; Html_Chabada; IemeLigneDuFichier; Illumine; IllumineLaListe; ImprimeLeFichier; ImprimeLeTexte; IntegerApres; IntegerEnFin; IntegerToAscii; IntegerToRGB; InteractiveMode; ItemHTMLFermant; Iterator; JArreteDeBosser; JeCommenceABosser; JeMeSignale; JeVaisBosser; JunkDir; KeyList; LacheLeBouton; LaTraduction; LConcat; LConcatTest; LesBoutonsDeLaFrame; LesBoutsDeLaLigneAvecTexteSeparateur; LesCaracteresAscii; LesCodesGenetiques; LesFichiersDe; LesFichiersQuiCommencentPar; LesLigneesUsageUnique; LesLignesDuFichier; LesLignesEntreExpressionsDuFichier; LesLignesIaJDuFichier; LesLignesVitales; LesMotsDeLaLigne; LesMotsDeLaLigneTabulee; LesMotsDuTexte; LesPremieresLignesDuFichier; LesProceduresExistantes; LesProceduresNonAppelantes; LesProceduresUsageUnique; LesSousChamps; LigneDesMots; LIndexes; ListeSansDoublon; ListMix; ListSeria; LocaText; Log; LogL; LogWscope; LogWscopeL; MailFichier; MailLbgi; MainLevee; MainLeveeSurUnCanva; Maxi; MdP; Mini; ModeInteractif; ModifyGlobalArray; ModifyGlobalVariables; Month1to12; MontreCeQueFaitLeBouton; MoyenneEcartMinMaxCumulLong; NextALPHA; NombresEntre; NomDe; NOp; NousAllonsAuBoulot; Nuance; Nuance3x8; NucOuProt; OldCanvaEnGIF; OldCanvaEnPostscriptPourGif; oldhsbToRgb; OldRapetisseLesBoutonsDe; OnRevientDuBoulot; OuiOuNon; OuiOuNonMemo; OuiOuNonTempo; Palette; PaletteDeCouleurs; PaqArray; PaqListe; PaqTexte; Parle; Patience; Phix; Photo; PlusProcheCodon; PlusProcheCouleur; PolicePourEntreTexte; PolicePourListBox; PourGscopeServer; PourWscope; PremiereLigneDuFichier; PrintCanvasFromLuc; PrintEnv; ProchaineBalise; QGQ; QueFaitLeBouton; QueFontLesBoutonsDe; QuiJAppel; QuiJAppelRecursif; QuiMAppel; RapetisseLesBoutonsDe; Realpath; RechercheDansLesBody; RecordsContaining; RecupereR_AEffacer; Recure; RecureSubdirFrom; RenaissanceDuWidget; RenumeroteLesPABs; RepertoireDeTravail; RequireOnce; ReSource; RestaureLeCanva; RetourneLaListe; ReverseString; rgbToHsv; RGBToInteger; Rpipe_AEffacer; RRGardeLesEucaryotes; SansAccent; Sature; Sauve; SauveLeCanva; SauveLesLignes; SauveTDom; SaveAs; ScanLaListe; SeriaList; ShowListbox; ShowText; SousListe; SplitOrgas; SqueletteDeProc; StatisticsFromList; StringApres; StringSuivant; SubmitGscope; SubstitueAvecBlancsDevant; TabulonsSansQuote; tc_loadNamedColor; tc_scaleChanged; tc_setScales; TCPJ; Tee; TestDialogPort; Teste_Fleche; Teste_LaTraduction; Teste_ScanLaListe; TesteTouteLaBalise; TesteValeurDeLaBalise; TestIt; TestListMix; TestNousAllonsAuBoulot; TestOuiOuNon; TestTmpFile; TestUnCanva; TestUpvar; TestWarne; TexteAscii; thtml; TmpFile; TouchePour; TouteLaBalise; Traduction; TriDeFichiers; TuArretesDeBosser; TuMontrerasCeQueFaitLeBouton; TwoPi; Tx; UnCanva; UneCouleurPourMainLevee; UneTaillePourMainLevee; ValeurApres; ValeurDeLaBalise; ValeurEnFin; Warne; Which; WrapLeTexte; Wup; Zippe
gscope_outsiders.tcl (annotations | original): CorrigeOuATapeTBlastN; DmelTransMem; Frechin; GeneNameDeLaListe; RhIcube; SupprimeLesFantomesDeOuATapeTBN; SupprimeLesFantomesDuTBlastN; VerifieBlastProGS; VerifieGscopeGagniere; VerifieTfaProGS
gscope_pampas.tcl (annotations | original): BIdAccessFromEntete; catchBlast; CatchDataUniprot; checkInventory; CheckProteinList; CompletePampasProject; CorrigeInfoPampas; CorrigeMacsimsForPampas; CreateGscopeProjectWithPampas; CreatePampasDb; CreatePampasDbFromGscopeProject; CreatePampasMsfFromExistingTfaOrMsf; CreatePampasMsfFromExistingTfaOrMsfAVANT_20200518; FillMutationTable; FoundProteinName; IdDuNom; Imagette3dDuPdb; Imagette3dDuPdbBlast; Imagette3dDuPdbBlastPourTous; MutationListOfPosition; PampasDb; PampasInfoForAllProteins; PampasLollipop; PampasProjectInfo; PampasServerDir; PkProtein; PPDB; PPInformePourTous; PPUniprotPourTous; ProjetsPampas; QaG; RelatedPDBs; RemoveBadCharacters; selectVariants; sendJsonToBrowser; SequenceDuNom; setVariantsAndUniprotFiche; SvgWithFeatures; SvgWithFeaturesPourTous; TestCreatePampasDb; TestJ; Zpy
gscope_passman.tcl (annotations | original): Cookie; MyLogin; TestPassman
gscope_pipala.tcl (annotations | original): BindSvg; BoutonneLaFenetreSvg; CanvaAsSvg; FormateLesCoordonnees; HtmlBlastDatabaseInventory; HtmlBlastIllustre; HtmlCompatibleColor; IllustreLeBlast; RRParseSvg; SelectBlastDatabase; ZincrSite
gscope_projet.tcl (annotations | original): BestDE; BestGN; BlastDatabaseInventory; BlastDatabaseSize; BlastDatabaseSizeNice; BlastDatabaseSizePourTous; BlastForTest; BlastomicsDb; BlastomicsProjects; BlastTestDir; CompleteBlastGscopeProject; CompleteCreateBlastDatabaseWithFasta; CompleteGscopeProjectWithFasta; CompleteGscopeProjectWithOi; CompleteRetourGrilladinGscopeProject; CompleteTaxoblaGscopeProject; CreateBlastDatabasesForDir; CreateGscopeProjectFromOiName; CreateGscopeProjectWithFasta; CreateGscopeProjectWithOi; CreateHitFiles; CreeBlastDatabaseForUniprot; GrilladesEnCours; InformeFromOiPourTous; MissBlastP; RelanceGrilladin; RetourGrilladin; SpOnlyFromFasta; TaxoblaProjects; ValidBlastDatabaseForGrilladin; ValidBlastDatabaseForHotdog
gscope_retchip.tcl (annotations | original): AcDuId; AffyAnno; AffyAnnoAllFields; AliasGeneNames; AvecKegg; BelleVue; BonneTete; CineticCongRD1; CineticCongRD1Filter; CineticCongRD1Tissues; CompareReduction; CompteLesPlusDixAccmRNA; CompulsoryGenesOnWeb; CopainsDuBlastpEVImmProt; CorrigeAliasGnEVImm; CorrigeInfosEVI; CorrigeLesBestCops; CreateRetinalTargets; DefinitionsOfAliasGeneName; DeProtEmblMultipleVersProtTfaEvi; DeProtEmblRecupereVersProtTfaEvi; DeProtEmblSingleVersProtTfaEvi; DeProtEmblVersProtTfaEvi; essai4994; essaidix; essaivingt; EviSummary; GbEnStock; GbsParLigne; GenoretProteomicsLinks; GscopeIdsOfGeneName; GscopeIdsOfIdAccArnm; GscopeIdsOfIdAccProt; GscopeIdsOfProbeSet; GscopeSynonyms; HGNC; HumanFromMouse; HumanSynonyms; ImAnnoRefPour; IndexDuDescrCustom; InformeAffyPourTous; InformeRetinalTargets; InterrogeCopainsDesCompulsory; InventaireDesNMsEtGBs; IsRetchip; LesRetChip; LignesParGb; LignesParNm; LoadTxlAffy; LocAffy; LocUcscEvi; MeilleurEMBL; MGI; MGIHGNC; MGILP; MGISW; MiseEnSequenceDeRetinoBase; MonCopain; MouseFromHuman; MouseSynonyms; MultipleProbeset; NiceWebOfCluster; NmEnStock; NmsParLigne; NomLigne; ProbesetsOfGeneName; ProbesetsOfGscopeId; ProtParGeneNamePourTous; ProtParLocUcsc; ProtParLocUcscPourTous; RangeGbNmFromNcbiEnStock; RangeProt; RenommeRetinalTargets; RetChip; RetChipGenesOnWeb; RetinalGene; RetinalGenesForSelectionOnWeb; RetinalGenesSummaryOnWeb; ShowDuplicates; SignalIntensities; SignalIntensityDir; Synonyms; SynonymsFromSameOrganism; SynonymsOfGscopeId; SynonymsPourTous; TestAffyAnno; TestCineticCongRD1; TestGenoretProteomicsLinks; TestMonCopain; TranscriptomicBestFriendsInCluster; TranscriptomicBestFriendsInClusterDir; TranscriptomicClusters; TranscriptomicClustersDir; TranscriptomicSignalIntensity; TrieLesReductions; VerifieCoherenceGscopeBioArrayBase
gscope_rroo.tcl (annotations | original): rroo
gscope_secator.tcl (annotations | original): Cluspack; GroupeDpc; GroupeOumy; GroupeSecator; LesAccessDuGroupe; LesClustersDeCluspack; RapportGroupeSecator; Secator; TestRGS
gscope_select.tcl (annotations | original): AfficheReduceMsf; AfficheSortedDistances; BlastReduit; BlastTrieDuPsiBlastPourTous; CreeLeFichierTFAsDesAccessDuBlastPPourTous; DernierBlastDuPsiBlast; DernierBlastDuPsiBlastPourTous; EstUnAccessSwissprot; LesBandelettesDuBlast; LesBlastsDuPsiBlast; LesElusDuBlastPAuChoixPourTous; LesElusDuBlastPParAuChoix; LesElusDuBlastPParBandelettes; LesElusDuBlastPParBandelettesPourTous; LesElusDuBlastPParMounir; LesElusDuBlastPParMounirPourTous; LoinToujours; LoinToujoursTest; MounirDuBlast; MsfDesMAFFTPourTous; MsfDesTFAsPourSapPourTous; PairwizeDistancesInMsf; ProtocoleDuProttfaAuMacsim; ProtocolePeroxisome; PsiBlast; ReduceMsf; SelectPdbForRefX; SelectPdbForRefXPourTous; ShowLesBlastsDuPsiBlast; TestBlastReduit
gscope_sequence.tcl (annotations | original): AccessAlternatif; AccessDuContigDuFragment; AccessDUneLigneBlast; AfficheChaqueSegmentDuBlastN; AfficheContigComplet; AffichePDB; AllowIllegalCharactersInTFA; AskForNumberingGenbank; BonDNA; CdsFromNM; ChaqueSegmentDuBlastN; ChroContigTronconOffsetOrganisme; CompareLesSequencesDesAccess; ComplementNuc; ConcatLesTFAs; ContigComplet; ContigEnStock; CorrigeTFA; CreeFichierTFADuGenomePourBanqueBlast; CreeLaSequenceDeLaZone; CreeLesDescriptifs_AvecLesCandidatsPouClustalW_PourTous; CreeLesDescriptifsAvecLeBlast; CreeLesDescriptifsAvecLeBlastPourTous; CreeLesDescriptifsAvecLeMSF; CreeLesDescriptifsAvecLeMSFPourTous; CreeLesDescriptifsAvecLeProfileSearch; CreeLesDescriptifsAvecLesAccess; CreeLesDescriptifsPourTous; CreeLesFichiersPIClustalwEtPSClustalw; CreeLesPABsAvecGenBank; CreeLesPABsAvecUnProteomeDansTFAs; CreeLesPABsAvecUnProteomeEtADN; CreeOuTapeTBlastX; CreeTFADeTousLesPABs; CreeTousLesTFAsDesMSFs; CreeTroncons; DecortiqueGBTags; DecortiqueGenBank; DecortiqueGenScan; DecortiqueLesGenBank; DecortiqueLesLignesEMBL; DeDoubleLesSequencesDuTFAs; DernierPointDeCoupure; EMBLdeGscope; EMBLduPDB; EmblInfo; EnlevePrefixeBank; EnteteDuFichierTFA; EnteteDuTexteTFA; EstUnAccessDUneBanqueBlastPDeGscope; EstUnAccessPDB; EstUnAccUniProt; EstUnBonAccess; EstUneEnteteTFA; EstUnFichierTFA; EstUnGI; EstUnIdSwissProt; EstUnIdUniprot; EstUnRefseq; EstUnUniProt; ExploseLeTFAs; ExtractPartsFromEMBL; ExtractPartsFromGenBank; ExtraitGenesDuGlimmer; FastaLineWidth; FetchContig; Fetche; FichierTfaFromFichierTfaWithoutNumbers; FNduLNgcg; FNduSNgcg; FOFtoTFAs; FormatDeLaSequence; FormatDeLaSequence_l; FormatDeLaSequenceDuFichier; FragmentDuFichierTFA; FromFasta; FromInfoOfGenBankToEMBL; FusionneLesGenscan; GCGtoTFA; GCGtoTFAPourToutLeRepertoire; GenBankToEMBL; GenScan; GenScanEnStock; GenScanEnStockPourTous; GereLesFragmentsDeLaBanqueBlast; Getz; GrosGetz; HistogrammeDuNombreDesHomologues; IdDuAc; IdentiteEtSimilariteDansMSF; InfoEmbl; InventaireDesAccessDesMSF; LaSequenceConvertieSiOnVeut; LaSequenceDesBanques; LaSequenceDesLignesEMBL; LaSequenceDuFichierEMBL; LaSequenceDuTexteEMBL; LaSequenceDuTFAs; LeChampDesLignesEMBL; LesAccessEMBLDesLignesEMBL; LesAcsDuId; LesBornesAvecLesNucEMBL; LesBornesDeGlimmer; LesBornesDuCDS; LesCopains; LesGenomesComplets; LesGenomesCompletsAuFormat; LesGenomesCompletsPossibles; LesGenomesCompletsPourGlossaire; LesHeadersDeLaBanqueBlast; LesKeywordsInteressantsDuGenbank; LesLongueurs; LesOrgaDistAccessDesOrthologues; LesProteinesPreditesDuGenscan; LesSubKeywordsInteressantsDuGenbank; LNduFNgcg; LNduSNgcg; LocaliseLaProteineSurLeGenome; LocaliseLeProteome; Locus; LOFtoTFAs; MemesSequencesDansFichiersTFA; MemesSequencesDansFichiersTFAPourTous; MiseAJourDesAccessDuFichierMSF; MoleculeDuPDB; MsfToTfa; NonOverlapingSeqADN; NucToComplementNuc; NucToProtTFA; NucToReverseAndComplementNuc; NucToReverseNuc; OffsetEtOrganismeDuFragment; OldChroContigTronconOffsetOrganisme; OldSequenceFormatTFADuEMBLMultiple; OrgaDuFetcheAccess; OrganismeCanoniqueDuGenbank; OrganismeDuBIdCiteDansNuctfaPourTous; OrganismeDuPDB; OrInformeAvecDaedalusHitPourTousganismeDuPABPourTous; OsCanon; PIetPSdansMSF; PlusProcheOrganismeDuBlast; PlusProcheOrganismeDuBlastPourTous; PlusProcheOrganismeDuNarcissePourTous; PolyLocalise; PossibleNucleotides; PremierAccessCommeJeVeuxDuBlast; PremierEMBL; PremierENSP0DuBlast; PrepareLesSequencesDesBanques; ProteinePredite; ProteinePreditePourTous; QueLaSequence; QueLaSequenceADNDuAccessRefseq; QueLaSequenceADNDuTexteGenbank; QueLaSequenceDesBanques; QueLaSequenceDesBanquesDeLaListe; QueLaSequenceDuAlias; QueLaSequenceDuEMBL; QueLaSequenceDuFichierEMBL; QueLaSequenceDuFichierGenbank; QueLaSequenceDuFichierTFA; QueLaSequenceDuPAB; QueLaSequenceDuTexteEMBL; QueLaSequenceDuTexteGenbank; QueLaSequenceDuTexteTFA; QueLaSequenceDuTFA; QueLaSequenceDuTFAs; QueLePremierGCG; QuelMask; QuelMaskPourTous; QueryDeLaLigne; QueSequenceFormatEMBL; QueSequenceFormatEMBL_l; QueSequenceFormatEMBLduPAB; ReassembleLesTronconsGenscan; RenommeLesGbkDeBbur; RepeatMasker; RepeatMaskerDuContigEnStock; RepeatMaskerDuTexte; RepeatMaskerForAll; RetireUnOrgaDansTFAs; rrQuelMask; RunDecortiqueGenBank; RunGenScanEtAffiche; RunRepeatMaskerEtAffiche; ScafoldDeCiona; ScanOS; SembleEtreUnAccessVarsplic; SeqNucToSeqPro; Sequence; SequenceADNDesFichiersGenBank; SequenceDesBanques; SequenceDesBanquesVite; SequenceFormatBrut; SequenceFormatBrut_l; SequenceFormatBrutduPAB; SequenceFormatEMBL; SequenceFormatEMBL_l; SequenceFormatEMBLDuFichier; SequenceFormatEMBLDuFichierTFA; SequenceFormatGCG; SequenceFormatGCGDuFichier; SequenceFormatTFA; SequenceFormatTFA_l; SequenceFormatTFADuEMBLMultiple; SequenceFormatTFADuFichier; SequenceFormatTFADuGenBankMultiple; SequencesDesBanques; SizeOfFilesIn; SNduFNgcg; SNduLNgcg; SNvsLNgcg; TestCdsFromNM; TestChaqueProteineDuTBlastN; TestConcatLesTFAs; TestDecortiqueEMBL; TestDecortiqueGenScan; TestEE; TestExtractPartsFromEMBL; TestFusionneLesGenscan; testgz; TestInfoEmbl; TestLaSequenceDesBanques; TestLKI; TestLSDT; TestQueLePremierGCG; TestQueSequenceFormatEMBL; TestReassembleLesTronconsGenscan; TestUnixFileName; TextePDB; TexteTfaFromTexteTfaWithoutNumbers; TFADeLaBanqueBlast; TfaDeLaBanqueBlast; TFADuPDB; TFAsFromAccessList; TFAToComplementTFA; TFAToReverseAndComplementTFA; TFAToReverseTFA; tfred; Tgbk; Tgbt; TLSDB; TousLesEMBLtoGCG; tp; Transcript; TrieLesExons; TrieLesExonsEtPurgeLesOverlaps; TronconneLeFichierTFA; UnixFileName; UnSeulGetz; UseBanqueIdForDbClustal; UseBirdForUniprot; VerifDesCopains; VoisinADNDeLaZone; WithPDB; ZoneADN; ZoneADNDuContig; ZoneADNDuFichierTFA; ZoneADNDuTexteTFA
gscope_setup.tcl (annotations | original): EstUneVariableGlobaleGenerale; GscopeIsOpen; InsideCSTB; OutsideCSTB; QuidSeqEstDisponible; WithinFed; WithinGenoret; WithPackage
gscope_source.tcl (annotations | original): ::source; GenoretDir; Logg; ProgSourceDir
gscope_specific.tcl (annotations | original): AccessHNR; ALaMain; AlviCreePpcrProt; AlviVerif; BalibaseCorrectLink; BalibaseCreateBlastDatabase; Bathy2010; BathyCompositionContig; BestHitReciproc; BestHitReciprocPourTous; BestInformePourBathy; BlastYEAH; CanvaPuzz; ClonePuzzleFit; CorrigeHistolica; CorrigeInfosU33p2; CorrigeMGU; CorrigeSynMito; CorrigeU133; CreateGscopeProjectGAL4; CreateOligosAndPpcrForAlvi; CreateTfasForYEAH; CreeLesSynthetases; CreeProtTfaPhorDeGenEmbl; DecortiqueBlastYEAH; DeDoubleYEAHpa; DispatchCluspack; DoubleFof; ExchangeColumns; GenomiqueComparativeParBlast; GetQS; GoodAccessForHam; InfHomolog; InformeAliasWithACIfNotGNPourTous; InformeBathy; InformeDEFromProttfaPourTous; InformeDESansOSPourTous; InformeGeneNameForPerox; InformeMGU4302; InformeOrganismePourBSD; InformeReferencePourBSD; Lana; LanaBestHits; LanaCommonTargets; LanaCreateBadNuctfa; LanaHits; LanaIgbmc; LanaLaTotale; LanaLesEtapesPossibles; LanaLocaliseBestHits; LanaMerck; LanaRep; LanaShow; LanaShowTarget; ll; MacsimsSpliRetPourNaomi; MenageU133; MobBinaryPath; MobCheckPrograms; MobDir; MobListOfCommand; MobListOfEnv; MobListOfFichierXml; MobyleDeploy; MontagePhoto; NomDuOldGI; NormaliseBanqueBlast; OrganismePresent; OrganismesPourGenomiqueComparative; PatternSearchInGenome; PCR; Pfalciparum; PhyloDistribution; PositionSurMrnaHNR; QfO; QfO_BlastbaseDir; QfO_CreateBlastbase; QfO_CreateProteomesWithOX; QfO_Dir; QfO_ProteomesDir; QfO_Wup; RecupereSc; References; ReferencesBSD; RejectScerFlo; ReorganiseBSD; SauvePuzzleFit; ScerFlo; SequencageAlvi; Seraphin37Orfs; SetGeneNameForPerox; ShowPC; Tbrucei; TbruceiChromosomes; TbruceiNuc; TesteDoublon; TestPCRAlvi; Tparva; TssForESRARE; TTLLrenomme; Valerie; ValiGNHNR; VraiNom; WikiTable; XenoGreffe; XenoGreffe22; YEAHbadThingsInAlignment; YEAHbilan; YEAHblast; YEAHbosse; YEAHcorrigeOffsetEtSpaceEtTilde; YEAHcreateGoodAlignment; YEAHfind; YEAHmaquilleAlignmentOld; YEAHmaquilleRsf; YEAHmouvement; YeahNon; YEAHOrganisms; YEAHorganOf; YeahOui; YEAHpa; YEAHrecap; YEAHreciprocal; YEAHreduitYEAHpa; YEAHshow; YEAHshowAvecRef; YEAHshowAvecRefYeastProttfaBlastp; YEAHshowBlastAvecRef; YEAHshowIt; YEAHshowList; YEAHshowSc; YEAHshowYeast; YEAHStore; YeastGlossary; YesScNoEh; YesScNoPf; YesScNoTb
gscope_sql.tcl (annotations | original): AvecPkTable; CanalSql; CanalSqlCurrent; CanalSqlDisconnect; FedNull; FedSql; IsSqlNull; LogInsUpDelPourExec; LogSqlReceptacleDir; MemeLigne; NextPk; ProchainPk; QuoteEtBackslashPourSql; Sqdb; SqdbTest; SqlColumnName; SqlConnect; SqlDisconnect; SqlExec; SqlExecForDatabase; SqlInsertOnceRecordIntoTable; SqlInsertRecordIntoTable; SqlResult; TestCanalSqlCurrent; TestonsSql; TestPostgreSQL; TestSqlInsert; TestTaxonomy; tsq; ValeurPk
gscope_sqlonage.tcl (annotations | original): CreateSqlonage; LoadSqlonage; OliSqlo
gscope_taxo.tcl (annotations | original): AfficheFetchFromTaxoLine; AfficheMsfOfFamiliarOrganisms; AfficheTaxoFromTaxoLine; AncetreCommun; AncetreCommunDeLaListe; BetterTaxId; BrowseTaxNCBI; ChargeTaxIJNC; CondenseTaxName; CreateMsfOfFamiliarOrganismsForAll; CreateSqlTaxonomy; CreateSqlTaxonomySynonym; CreeTaxoblaVide; CreeTaxoblaWithMyMissBlast; Descendant; DoublonsDansTaxUniProt; EstUneBacterie; EstUnEucaryote; FamiliarOrganismsInMSF; HighlightClade; JeSuisDescendantDe; JeSuisTonAncetre; LesChampsIndividuels; LesClassesDuDescriptif; LesOrganismesDuBlast; LesTaxIdDesGenomesComplets; LoadTaxNCBI; LoadTaxUniProt; MsfOfFamiliarOrganisms; NiceChildrenOf; OCduOS; OsOcParTaxNCBI; RecupereLesVraisEmbls; RefDuGenomeComplet; Tax; TaxAK; TaxC; TaxClass; TaxDir; TaxGetz; TaxI; TaxIdDuAccess; TaxIdDuFichierRef; TaxIdDuGenomeComplet; TaxIdDuPAB; TaxIdDuTexteEmbl; TaxIdOfFamiliarOrganisms; TaxN; TaxNCBI; TaxoblaKeepOnly; TaxonomyDuBlast; TaxonomyDuBlastPourTous; TaxoValide; TaxParQdsMemo; TaxSystem; TaxUniProt; TaxWithQds; TestNCBINames; TestSock; TestTaxClass; TestTaxClassBis; TestTaxParQdsMemo
gscope_topographe.tcl (annotations | original): BanbiDir; ConfigureGscopersoGscopublic; Fiches; Genomics; GenomicsLinks; GenomicsPossibles; GenomicsSubDir; GscopeBin; GscopeContrib; GscopeDatabaseDir; GscopeDir; GscopeEtc; HomeRipp; HumanGenomeDir; InfoScript; LogDir; Moucharde; OntologyDir; OnTraite; OnTraiteBalibase; OnTraiteDesAffymetrix; OnTraiteDesCDNAs; OnTraiteDesCDS; OnTraiteDesCDSProtFoF; OnTraiteDesClones; OnTraiteDesNucleotides; OnTraiteDesProteines; OnTraiteEVIhs; OnTraiteEVImm; OnTraiteGenoretGenes; OnTraiteGGhs; OnTraiteGGmm; OnTraiteGGWhs; OnTraiteGGWmm; OnTraiteGscopeClonage; OnTraiteMS2PH; OnTraitePeroxisome; OnTraitePuzzleFit; OnTraiteRetGene; OnTraiteSM2PH; OnTraiteSpine; OnTraiteSpliRet; OnTraiteSpliRetMouse; OnTraiteSpliRetRat; OnTraiteTroisPrima; OnTraiteUCSCGenomes; OnTraiteUneCollection; OnTraiteUnGenome; ProjetGscope; RepertoireDuGenome; SetOnTraiteLike; VersBiolo; VersionDeGscope; WaliSourceDir
gscope_tree.tcl (annotations | original)
gscope_ucsc.tcl (annotations | original): BoutADNDeUcsc; ConcordanceNmNuctfa; CytoBandUcsc; DrawGenesFromZone_AECRIRE; GenesFromZone; GenomeSize; HumanGenomeUcsc; LocAfter; LocaliseCdsOnMyRefMrna; LocaliseDansLaListe; LocaliseMyRefMrna; LocBefore; LocIn; LocInBetween; LocUcsc; LocUcscEssai; LocUcscOld; MyRefMrna; NotationUCSC; TestCrmMapper; TestLocAfter
gscope_upload.tcl (annotations | original): form-data::add_binary; form-data::add_field; form-data::compose; form-data::format; TestUpload
gscope_vrp.tcl (annotations | original): CompareLesScopes; EDD; EddHtml; FicFastaBuzon; RepEDD; RepEDD_AFaire; ScopeCreateTFAs; ScopeCreateVrp; ScopeLaTotale; ScopeVerif; UrlEDD; VispValue; VrpValue
gscope_vs.tcl (annotations | original): DismissVS; GscopeVersusGscope; SameBody
gscope_webservice.tcl (annotations | original): AddLinx; AddLinxTest; ArrayFromSerial; ArrayFromSeriallist; ArraytypeWithPipeWork; Cps; CreateArray; CreateArrayFromList; FirstElementFromSerial; IdCard; ListFromSerial; ListFromSeriallist; Login; MyLinx; PhpSerialize; Qsub; RecurSeriallistFromSerial; SerialFromArray; SerialFromLinesOfFile; SerialFromList; SeriallistFromSerial; TestQsub; TestSeriallistFromSerial; TestWebService; TestWebServiceOLD; ValueFromSerial; ValueFromSeriallist; WebService; WebServiceOOOOOOOOOOLD; WebServiceUrl; WithWebService
gscope_xbgs.tcl (annotations | original): AfficheLesSpines; AfficheSpineDefinitions; CouleurDegradee; CreateSpineXML; CreateTargetId; DiffDesXml; HistoDesSpineTasks; InformeParSpinePourTous; InformePDB; InformeSpineDefPourTous; InformeSpineIDPourTous; LaListeDesTasks; LesDefinitionsBienParenthesees; LesMemesDansPGSetXGS; LesPdbDesRecepteursNucleaires; LesTAFs; MemeOwner; NiceSpineTask; NosPdbofNuclearReceptors; NosPDBs; OldSpineDefinition; OneToSpine; OrganismeDesXGSs; OrganismePourSpine; PDBsDuXGS; People; PeopleOld; RankOfSpineTask; RefreshFichierXGS; RepXbgs; RequiredSpineTask; ScanLaLigneSpine; SequencePourSpine; SpineDef; SpineDefinition; SpineIgbmcSite; SpineOK; SpineRefParNarcisse; SpineSummary; SpineSummaryOnWeb; SpineTask; SpineTaskLatest; SpineTaskOrdered; UnPetitNomPourNosPdbs; VerifieOrganismeDuPAB; VerifiePDB; VerifieSpineDefDesMutants; VerifieSpineRefDesMutants; XGSPourOwner
gscope_xml.tcl (annotations | original): Xml_BAC; Xml_Prologue
gscope_yeast.tcl (annotations | original): AdnDesCopainsAlignes; CreateJoyCDSGscopeProject; CreateJoyChrGscopeProject; CreateJoyGscopeProjects; CreateJoyGscopeProjectsPourTous; CreateYeastCDSGscopeProject; CreateYeastChrGscopeProject; CreateYeastGenomesFile; CreateYeastGscopeProjects; CreateYeastGscopeProjectsPourTous; CsvLineForS288C; DeployJoy; GenbankNucleotide; GetGenbankForS288Cne_sert_plus; JoyCode; JoyCreateAllJoyAllProttfa; JoyCreateAllProttfa; JoyCreateAllProttfaPourTous; JoyCreateGenbankFiles; JoyCreateTfasDesCopains; JoyDir; JoyGenome; JoyVersusOi; NiceCDSFromCDSLines; NiceRNAFromRNALines; NomDuLocusTag; reste; tmou; YeastFile; YeastFriends; YeastGenome; YeastGenomesInventory; YeastListOfCds; YeastReference; YeastTfasDesCopains

Index generated 2022-04-05 at 12:55.